Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq95031 410 2e-109 seq270369 98.7 1e-15 >seq95031 Length=3790 Score = 410 bits (454), Expect = 2e-109 Identities = 1263/1941 (65%), Gaps = 17/1941 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| ||||||||| | || | || ||||| || || Sbjct 2652 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 2593 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || || || | || || || ||||| || || ||||| || | ||| Sbjct 2592 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2533 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 2532 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2473 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || || | ||| || || || || | ||||| ||| || Sbjct 2472 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 2413 Query 68893 TCAGATGG-TACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCC 68951 || | || | | | | ||| | ||||| || || || || || || | || || Sbjct 2412 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCC 2354 Query 68952 ATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACC 69011 || || || || || || || | || || || || || ||||| | || | Sbjct 2353 TGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 2294 Query 69012 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG 69071 || || || | ||||| || | |||| || || || ||| || ||||| || Sbjct 2293 GTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGG 2234 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 ||| | | || || || ||||| ||||| || || || ||||| || || || || || Sbjct 2233 GTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTG 2174 Query 69132 TCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 69191 | ||| || || |||| ||||| || | ||||| || ||||| || || || || || Sbjct 2173 GCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTT 2114 Query 69192 AAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-T 69250 | ||| ||| | |||||| ||| ||||| ||| ||||| |||| | Sbjct 2113 CAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAA-GTCCGCT 2055 Query 69251 CTA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 | | || |||| || || || | || || |||||||| || |||||||||| Sbjct 2054 CCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGT 1995 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 | | || | || || ||||| || || || || | ||||| || |||||||| | Sbjct 1994 GGCTGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCT 1935 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 | || || ||||| |||| |||||||| ||||| || || | || ||||||||||| Sbjct 1934 GTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTG 1875 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCT 69487 |||| || ||||||| | | ||| | | ||| || | ||| |||| | | Sbjct 1874 TCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCC 1815 Query 69488 TCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 || || ||||| || || ||| |||||| || || ||||| || ||||| | Sbjct 1814 CCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACC 1755 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 | || || || || |||||||||| ||||| | || | || |||| ||||| | Sbjct 1754 CTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGA 1695 Query 69608 ATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | || ||||| ||||| || | || ||| || || |||| ||| | || || ||||| Sbjct 1694 ACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCCTTTCCG 1636 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || || || || || || || || | | || | ||||| || || || || || Sbjct 1635 GTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATG 1576 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | |||| |||| || || || ||||| || | ||| | || ||||| || || Sbjct 1575 GCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 1516 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 ||||||||||| || | | || || || || || || || || | || || || || Sbjct 1515 ACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCC 1456 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 ||| | || || || | | ||| ||||| || || ||| ||||| || || Sbjct 1455 GTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCG 1396 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | |||| ||||| || || || || ||||| || ||| ||||| || || || Sbjct 1395 CATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 1336 Query 69967 CAGCTAGACATTTGATGA-TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||||| |||| || | ||| | ||||| || || || | || || || ||||| || Sbjct 1335 CAGCTGGACAGCTGTGGCCTGT-TGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGT 1277 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || ||||| ||||| || ||||| |||| || || ||| || || Sbjct 1276 GAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTG 1217 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | | || | ||| | ||| ||||| ||||| || || ||| || || Sbjct 1216 GATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGAT 1157 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||||||||||| || |||||||| || || || || ||||||| || || ||||| Sbjct 1156 CTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCT 1097 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC---CATAAC 70262 ||| |||| || | || || || || || | | | ||| || || | | | Sbjct 1096 GTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGTCTC 1037 Query 70263 AGTAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATC 70322 | ||||| || || || | ||||| || || | |||||| | | || Sbjct 1036 CTT---GGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTACAGGTC 980 Query 70323 TTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCT 70382 ||||| || ||||| || | || || || || ||||| | ||||| | ||| || | Sbjct 979 CTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCG 920 Query 70383 GGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGC 70442 || || || || || ||||| || || | || || ||| || | || || ||||| Sbjct 919 TGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCAGCAGC 860 Query 70443 TAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGC 70502 | ||| || | || | || || || ||| | || | || || || || ||||||| Sbjct 859 CAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTCATGGT 800 Query 70503 TATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGA 70562 || | | ||||| | || || | |||||| || || || | || || ||| | Sbjct 799 GATCTGGGCCGGATCCACAAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATGCGACA 740 Query 70563 TGTAATTTTATCAAACATAAC 70583 || ||||| || ||||| || Sbjct 739 GGTGATTTTGTCGAACATGAC 719 >seq270369 Length=13262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || ||||| || ||||||| || |||||||| ||||| || ||||| || Sbjct 6580 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 6639 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || | || || || ||||| |||| |||||||| || Sbjct 6640 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATGAT 6698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684511213524480