Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq126335 109 4e-19 seq245716 100 2e-16 seq153065 100 2e-16 >seq126335 Length=2118 Score = 109 bits (120), Expect = 4e-19 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT-GA 77369 |||||| ||||||||||| ||| ||| |||||||||||| |||||| || ||||| | Sbjct 1975 CCAGACGACCTCCAGCTCTGCATTCAGTCGGTCCAGCTTCACAAAGTCGTCTTTGTTGGT 2034 Query 77370 CAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||| ||||| | ||||| |||||||||| ||||||||||||| ||||| | | Sbjct 2035 GATCTGA-CCTCCAGATTTCAGCCGCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGGTGG 2093 Query 77430 TCACACC 77436 ||||||| Sbjct 2094 TCACACC 2100 >seq245716 Length=1676 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| |||||||||||||||| ||||| ||||||||||| || ||| || | Sbjct 638 CTCCTCTGAAGAACGCCCAGGCATCTTTCTCTGACGCAAACTTCTTGAAAGAGGCAGCGG 697 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | |||||||| || ||||||||||||||||||| Sbjct 698 GAAATTTGTCCACCTGGCTCTTACATTCATCCC 730 >seq153065 Length=1631 Score = 100 bits (110), Expect = 2e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 |||||||||||||| || || ||| |||| || || || || |||||||||| |||||| Sbjct 443 CCTGCTCCCAGTTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAGACTGTCAGTCCAGCA 384 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||||| || | | | | ||| || | ||||||||||| |||||||||| Sbjct 383 AACACAGCACAGGTCAGGCACAAGGCTTGCAGGACAGTGGAGTATTCGTAGAAGGTCA 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396103401588160