Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq95031 203 4e-47 seq270369 102 1e-16 >seq95031 Length=3790 Score = 203 bits (224), Expect = 4e-47 Identities = 650/990 (66%), Gaps = 25/990 (3%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 2650 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 2591 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| || | ||||||||| | ||||| | ||| | Sbjct 2590 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 2531 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 2530 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 2471 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | ||| ||||| || | | |||||| | |||| Sbjct 2470 GCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTT- 2412 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTG-GGACGCGGGAGAAC 110909 | | || ||| | ||||||||||| |||| || | |||||| || ||||||| | Sbjct 2411 CGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGA--CGGGAGAGC 2355 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | | | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 2354 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 2295 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 |||| || |||| || ||||| || ||||| | || || || | || || | Sbjct 2294 CGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACG 2235 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || ||||||| | |||||| || || | ||||| || |||| Sbjct 2234 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 2175 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 | ||| | || |||||| ||| || ||||| | || | || |||| || Sbjct 2174 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGT 2115 Query 111150 TTAGATTTTTGGTAACAAT--CTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGC 111206 | | ||| ||| || || ||||| ||| ||||||| | | |||||||| | Sbjct 2114 TCAAATTCTTG---ACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCC 2058 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | ||| |||| ||| | || || ||||| |||| ||| || || || || Sbjct 2057 G---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCT 2001 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 |||| | |||||||| | |||||||| || | |||| ||| || || |||| Sbjct 2000 CATCGTGGCTGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCA 1941 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||| |||||| |||||| ||||||| || || ||||| |||||||| ||||| || | Sbjct 1940 GATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAG 1881 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG 111445 | || ||||| || | || || || | ||| ||| | | | || || | | ||| Sbjct 1880 TTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCT-TCACCACGCGCTTG 1822 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 111504 | |||| | ||| || |||||||| ||| |||||||| ||| | || || Sbjct 1821 AACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTC-CCCCCAGCACTC 1763 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACC 111562 | | ||||| || || ||||| | |||||||| | || | || ||| || Sbjct 1762 GTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCA--GTCCTCGTTGCTCTCCACT 1705 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 | ||||||||| ||||| || ||||||||| Sbjct 1704 CTCTTCATGAACAGGTCGGGGATCCACAGG 1675 >seq270369 Length=13262 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| ||||||||||| || || || || | ||| || || || || Sbjct 6555 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCC 6614 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 6615 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCC 6674 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420 || || ||||| |||| || || || | ||| || Sbjct 6675 GGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625839917107200