Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq95031 185 1e-41 seq270369 86.0 8e-12 >seq95031 Length=3790 Score = 185 bits (204), Expect = 1e-41 Identities = 902/1402 (64%), Gaps = 50/1402 (4%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 2556 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2497 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 2496 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCC 2437 Query 118302 TTGAG-AGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358 || || ||| ||| |||| | |||| | | | || | || |||||| || |||| Sbjct 2436 TTCAGCAGCTTCC-AGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGTACTGC 2380 Query 118359 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 ||||| || | | |||| || || || | | ||||| || ||||| | | | Sbjct 2379 AGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGG 2322 Query 118417 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA 118476 ||| ||| |||||||||| ||||| ||||| || || | || || || || ||||| Sbjct 2321 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCA 2262 Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536 || ||||| | | || |||| | || | || || ||||||| | || Sbjct 2261 GCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAAC 2202 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT--CCGAG-CGGTCTCCA 118593 ||||||| || | ||||| || | || | | | || ||||| ||| ||| | | Sbjct 2201 CTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGC---A 2145 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 | ||||| | || | ||||| | | | || | ||| ||| || || || || | Sbjct 2144 CTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAG 2085 Query 118654 CATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 ||| || |||| | |||||| | || ||| |||| ||| | || || Sbjct 2084 -ATGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGCGCA 2029 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 ||||| |||||||||||||| | |||||| | |||||||| || ||||| ||| Sbjct 2028 ATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTG 1969 Query 118773 CACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 || | ||| || ||| | |||||||||| |||| ||| || ||| |||| || | Sbjct 1968 CAGAGGTTGCTGGACT--TGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGG 1911 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | || ||||| |||||||||||||| || || || || ||||||| || || || | || Sbjct 1910 CGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCGATAACGGCGTGCC 1851 Query 118891 AGACATCGGC--AGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 ||| | || ||| ||| | ||| ||||| | ||| || ||||| Sbjct 1850 --ACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTA 1793 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| ||| ||||| || ||| | ||| | |||||| || | || || | Sbjct 1792 GAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACAT 1733 Query 119009 GAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 |||||||| | || | | ||| || | ||||||||| ||||| |||||||| || Sbjct 1732 CAGAGACCA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAG- 1676 Query 119067 GCCG-AGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124 |||| |||| || |||| | | ||| || | | || || || | ||||| Sbjct 1675 GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTTAGCTCCA 1617 Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTA 119180 ||||| | | || |||||||| || |||||||||| |||| | || || Sbjct 1616 GGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCT 1557 Query 119181 CGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATG 119240 | | || |||||| || || | || ||| ||| | || | ||||| || | | Sbjct 1556 TGTTG-CCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACG 1498 Query 119241 ATACCATCGGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGA--CATCG 119297 | || | ||| | ||| || || || ||| | | || | ||||| || | Sbjct 1497 ACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT-GTTCTGATGCAGCT 1439 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 | || || |||||| ||||| || | || ||||| | ||||| | | | || || Sbjct 1438 T--ATCGCCACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTG 1381 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 |||| || || ||||| ||| | || | |||| ||||||||||| |||| || Sbjct 1380 TCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGT 1321 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 119476 |||||| || || ||||||||||| || || | |||||| ||||| || | | || Sbjct 1320 GGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC-CACTTCTCTGA 1262 Query 119477 CATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 119536 || | || ||| ||||| | | | ||| ||||| | ||| || |||| || || Sbjct 1261 CAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACAC 1202 Query 119537 CCGCATAAACATGTATTGGGGT 119558 | ||| | ||||| || ||| Sbjct 1201 TCTCATGAGCATGTGCTGCGGT 1180 >seq270369 Length=13262 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| || || ||||| Sbjct 5636 TAGATGTTGCTGGTGTAAGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 5695 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| || ||||| Sbjct 5696 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 5727 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| ||| |||||||||| || |||||||||| || || | | | |||||| Sbjct 6555 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 6612 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| |||| || || ||| |||| || || |||||||| |||||||||||||| Sbjct 6613 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 6672 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 || || || || || || | || || || | ||| || Sbjct 6673 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616276613777920