Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq98419 141 3e-28 seq148584 104 7e-17 seq43135 102 2e-16 seq97422 95.1 4e-14 >seq98419 Length=5717 Score = 141 bits (156), Expect = 3e-28 Identities = 416/636 (65%), Gaps = 5/636 (1%) Strand=Plus/Plus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 |||||||| || || || || || || ||||| || || || ||||| || || || Sbjct 1153 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCGTTCACT 1212 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||| | | || || || | || || || || | ||| || || | || Sbjct 1213 GACACAGAGAGGCTCATCGGGGACGCAGCCAAGAACCAGGTGGCTTTGAACCCCAGCAAC 1272 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || |||||||| ||| |||| ||||| |||| || ||| | || | Sbjct 1273 ACCGTGTTTGATGCCAAGAGACTGATTGGAAGAAAGATTGATGATGCAGTGGTGCAGGCG 1332 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | || |||| || || | || | || | ||||| | || || | ||| | Sbjct 1333 GATATGAAGCATTGGCCCTTCAAGGT-GATCGGA--GACGGAGGGAAGCCCAAAATTCAA 1389 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || || | ||||| || | ||| || || || || ||||| || ||||| | Sbjct 1390 GTGGAGCACAAAGGGGAGGAGAAAGCCTTCAACCCTGAGGAGATTTCCTCCATGGTCCTG 1449 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||| ||||||||||| || | || ||| || | | ||||| || Sbjct 1450 GTGAAGATGAAGGAGATTGCTGAAGCCTACCTGGGCCAAAAGGTGTCCAAAGCTGTCATC 1509 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || || || || || || ||||||| || || |||||||| ||| ||| Sbjct 1510 ACAGTCCCGGCGTACTTCAACGACTCCCAGCGACAGGCGACTAAAGATGCAGGCGTCATC 1569 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | | || || || || || || || || || || || || || || || || Sbjct 1570 GCAGGACTGCACGTCCTGAGGATCATCAACGAGCCGACGGCGGCCGCCATCGCGTACGGT 1629 Query 349739 CTTGATAAAATGAGTGAC-CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || | || | ||| |||| || | || || ||||| || || || || || Sbjct 1630 CTGGACAGAA-GCAAGACAGGAGAACGTAACGTCCTGATCTTTGACTTGGGCGGAGGAAC 1688 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || || || || | || || ||||||| || || ||||| || ||||| || ||||| Sbjct 1689 CTTCGACGTGTCCATCCTGACCATTGAAGACGGTATCTTTGAGGTGAAAGCCACGGCTGG 1748 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 || || || || ||||||||||| ||||| || || Sbjct 1749 AGACACTCACCTGGGTGGAGAAGACTTTGACAACCG 1784 >seq148584 Length=286 Score = 104 bits (114), Expect = 7e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || |||||||||||||| ||||| ||||| || ||||| || || ||||| ||||| ||| Sbjct 137 TGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGGATT 78 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 ||||| || || || ||||| |||||| || || || || || || | |||||||| Sbjct 77 TTAGCCTTGACGTTTTCAATGGAATCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCA 18 Query 140712 GTTAGTGTTTTTACAAA 140728 || || || || || || Sbjct 17 GTCAGGGTCTTCACGAA 1 >seq43135 Length=3723 Score = 102 bits (112), Expect = 2e-16 Identities = 504/795 (63%), Gaps = 8/795 (1%) Strand=Plus/Minus Query 349526 TTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCA 349585 || || || |||||||| || || ||| | | || ||||||||||| |||||||| || Sbjct 2154 TTCTTCCCGGAAGAAATCTCCTCCATGATCCTGGTGAAAATGAAGGAGATTGCTGAGGCC 2095 Query 349586 TATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCC 349645 || | || | | || | | || || || || || ||||| ||||| || || | Sbjct 2094 TACCTGGGACAGAGGGTGTCAAACGCAGTCATCACAGTTCCAGCTTATTTCAACGACTCT 2035 Query 349646 CAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATT 349705 ||| | || || || || || || || | || | || || || || || || Sbjct 2034 CAGAGGCAAGCCACCAAGGACGCCGGGGTGATCTCTGGACTGAACGTCCTCAGGATCATC 1975 Query 349706 AATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAA-ATGAGTGACCAAGaaaa 349764 || || ||||| || ||||| || || || || || |||||| | | || ||| Sbjct 1974 AACGAGCCCACGGCAGCAGCCATCGCCTACGGCCTGGATAAAGGTAAAAGA-GGAGAGCG 1916 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 || | || || |||||| | || || || || ||||| || || | || || | || Sbjct 1915 CAACGTGCTCATCTTTGATCTCGGCGGAGGCACATTTGACGTGTCCATCCTGACCATCGA 1856 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 || || || ||||| || ||||| || || || || || || ||||| || || || || Sbjct 1855 CGACGGCATCTTTGAGGTGAAAGCCACCGCGGGAGACACGCACCTTGGCGGGGAGGACTT 1796 Query 349885 TGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATAT 349944 ||| || || | || || ||||| | |||||||| | || || | || || Sbjct 1795 TGACAACCGGATGGTCAACCACTTTGTAGAGGAATTTAAAAGAAAACACAAGAAGGACAT 1736 Query 349945 TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC 350004 | | ||| ||||| || | | || | || || || || | || ||| | | Sbjct 1735 CAGCCAGAATAAGAGAGCGGTGAGGAGACTGCGTACGGCTTGCGAGAGAGCGAAGAGGAC 1676 Query 350005 CTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTT 350064 | | || || | ||||| || | || || || ||||| || |||| || || Sbjct 1675 CCTGTCCTCCAGCACCCAGGCCAGCCTCGAGATCGACTCTCTGTTCGAGGGCATCGACTT 1616 Query 350065 CTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT--ATGTATGGATCTTTTTAGAGCA 350122 || | || || || | || || ||||| || | ||| | || || || || | | Sbjct 1615 CTACACCTCCATCACGAGGGCACGCTTTGAGGAGCTCAATGCA--GAGCTCTTCAGGGGA 1558 Query 350123 ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGAT 350182 ||| |||| || || || || || | || || || || ||| |||| || Sbjct 1557 ACACTGGAGCCAGTCGAGAAGTCCTTGCAGGACGCCAAGCTGGACAAGTCCAAGATCCAT 1498 Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242 || | || | || || || || ||| | || || ||| | || || | | || Sbjct 1497 GAGATTGTCCTGGTCGGCGGCTCCACAAGAATCCCCAAAATCCAGAAGCTCTTGCAGGAC 1438 Query 350243 TTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGG 350301 ||||||| |||| ||||| | ||| | || || |||||||||||||| || || || Sbjct 1437 CTTTTTAACGGCAGAGAACTGAACAAGAGC-ATCAACCCAGATGAAGCTGTGGCGTACGG 1379 Query 350302 TGCTGCTGTTCAGGC 350316 ||| || || ||||| Sbjct 1378 TGCAGCGGTCCAGGC 1364 >seq97422 Length=7209 Score = 95.1 bits (104), Expect = 4e-14 Identities = 345/535 (64%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || ||||| | || || || || ||||| || || | | || ||||||| || Sbjct 3418 CTCATCTTTGACCTGGGCGGCGGCACGTTTGACGTCTCCATCTTGACTATTGAAGACGGC 3359 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || | || || || || || || | || |||||||| || || || Sbjct 3358 ATCTTCGAGGTCAAGTCCACAGCAGGCGACACCCACTTGGGAGGAGAAGACTTCGACAAC 3299 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGA 349950 || | || || || | || || ||||| |||| || | || || | || Sbjct 3298 CGCATGGTCAACCACTTCATCGGCGAGTTCAAGCG-CAAGTACAAGAAAGAAATCAGCGA 3240 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || || |||||||||| | || |||||||| | || ||||| || | || Sbjct 3239 CAACAAGAGGGCGGTGCGTCGCCTGCGCACGGCGTGTGAGAGGGCAAAGCGCACCCTGTC 3180 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 ||| | ||||| || |||||||| |||||||| || || ||||||| | Sbjct 3179 ATCCAGCACCCAGGCCAGCATTGAAATCGATTCTCTGTACGAAGGAGTCGATTTCTACAC 3120 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || ||||| | || || || || || | ||| || || ||| ||| |||| Sbjct 3119 CTCGATTACCAGGGCCCGATTCGAGGAGCTGAACGCGGACCTGTTCCGAGGAACCCTGGA 3060 Query 350131 TCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGT 350190 ||||||||||| | | || || || ||| ||| ||| || | || | || Sbjct 3059 GCCTGTGGAAAAGGCTCTCCGTGACGCCAAGATGGACAAGGCTCAAATCCACGACATTGT 3000 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAA 350250 | ||||| ||||| || |||||||| || | || || | || || ||||| || Sbjct 2999 CCTGGTTGGAGGTTCCACTCGTATTCCCAAGATCCAGAAGCTGCTGCAGGACTTTTTCAA 2940 Query 350251 TGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 ||| || || | | | ||| | ||||| || |||||||| || || |||||||| Sbjct 2939 TGGGAAGGAGCTCAACAAGAGC-ATTAACCCTGATGAAGCAGTGGCCTATGGTGC 2886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509833334943296