Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq95031 392 4e-104 seq270369 96.9 4e-15 >seq95031 Length=3790 Score = 392 bits (434), Expect = 4e-104 Identities = 916/1360 (67%), Gaps = 49/1360 (4%) Strand=Plus/Minus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| |||| ||| || ||| |||||||||| | ||||| | |||| | |||| Sbjct 2583 AACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCG 2524 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTC 78627 ||||| |||| |||||||||||| ||||| || ||||| || || | ||| || ||| Sbjct 2523 TTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTC 2464 Query 78628 CGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGCC 78681 | | || || | ||||| |||| || | |||| | ||| | | | Sbjct 2463 CTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGC 2404 Query 78682 GCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG--GACGCCGGCGACCCCTTGAACG 78739 || |||||||||| || ||||| |||| | |||| || || || | ||| Sbjct 2403 TTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACG 2346 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799 ||||||| | || ||| ||| || ||||| | | |||||| |||||||| | Sbjct 2345 TCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGA 2286 Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGA--AAGGCC 78857 ||||||||||| | || ||| | |||| | ||||||| || || Sbjct 2285 TGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGC- 2227 Query 78858 GAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCAT 78917 | | |||||| |||| |||| || |||||||| || | ||||| | ||||||| | Sbjct 2226 -ATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTT 2168 Query 78918 GTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAG 78974 |||| |||| |||| |||| | || || |||| ||||||| ||||| Sbjct 2167 GTTGGACTTTT---CCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAA 2111 Query 78975 GTTACGCGTGACGA---CCCGAGTCACCTCGTACAATTTGGCGAAATCAAAA-TGATTTC 79030 || | |||||| | ||||| || ||| || |||||| | || Sbjct 2110 ATT---CTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCGCTC 2054 Query 79031 CTT--TGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCG 79087 | ||| | | | || ||| | || ||||| || ||||| || ||| || Sbjct 2053 CGGGGTGACGTACATGTTGAGCGCA-ATTGAGGCCAGATTACACACCGCTACCTCATCGT 1995 Query 79088 GGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCT 79147 |||| | |||||||||||||||||| | || |||||||||||||| | |||| Sbjct 1994 GGCTGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCT 1935 Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207 |||||||||||| ||| |||||||| ||||| |||||| ||||| || || || Sbjct 1934 GTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTG 1875 Query 79208 CCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGAC 79267 ||| || || |||| ||| ||| | | | | ||| || || |||| || | Sbjct 1874 TCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCC 1815 Query 79268 CCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGC 79327 |||| | || | ||| | || | ||| ||||||| || ||| || | Sbjct 1814 CCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACC 1755 Query 79328 CCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGA 79387 | |||||||||| || |||||||| ||||||||||| |||| || ||| ||||| Sbjct 1754 CTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGA 1695 Query 79388 AGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 | ||||| |||||||||||| |||| ||| ||||| | | | | |||||| | || Sbjct 1694 ACAGGTCGGGGATCCACAGG-CCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCG 1636 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||| ||||| || ||||| | | |||||||||||| |||||||| || ||| Sbjct 1635 GTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATG 1576 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 ||||| | || | |||| ||||||||||| |||||| || |||||||||||| || Sbjct 1575 GCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 1516 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCG 79626 |||| |||||||| |||| |||| || | |||||| || ||| || |||| | Sbjct 1515 ACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGA----TGTA--G 1462 Query 79627 CTCGCCCGAATGTTC-GA-GCAG----TGG--ATTCCGATGCCCCCGGACCACTTGGAGA 79678 ||| |||| ||||| || |||| | | | || || ||||||| | ||||||| Sbjct 1461 CTC-CCCG-TTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGA 1404 Query 79679 TGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGA 79738 || | ||||| | ||| ||||| ||||| ||||| ||||| |||||| ||||| |||| Sbjct 1403 TGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGA 1344 Query 79739 CCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCG 79798 |||||||||||| |||| |||||| |||| || || ||||||||||| || || | | Sbjct 1343 GCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGG 1284 Query 79799 CGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||| ||||| |||| | || ||| | ||||||||| Sbjct 1283 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTC 1244 Score = 271 bits (300), Expect = 8e-68 Identities = 873/1336 (65%), Gaps = 53/1336 (4%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| ||||| | || || || |||||| Sbjct 1244 GAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAAC 1303 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| |||| ||||| ||||| | || ||||| || |||||| Sbjct 1304 GCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGC 1363 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || ||||| ||||| ||||| ||| | ||||| | ||||||||| | ||||||| Sbjct 1364 ATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGGA 1423 Query 19346 ATCGG------GATCCACTGC-TC-GAATATCCGGTCGAGTGGTACACGAATCAATGGGA 19397 || || ||| |||| || ||| | | || | | |||| || || | Sbjct 1424 ATTGGTGTGGCGATAAGCTGCATCAGAACAACGGG----GAGCTACA----TCGCCGGCA 1475 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | ||||| || |||| ||||||| ||||| | || | |||||||||||| | | Sbjct 1476 CCAACGGCAACTCCAACGGGGTCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTT 1535 Query 19458 ACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGC 19517 ||||| ||||||| ||| ||| | || | |||||||| ||||| ||||| |||| Sbjct 1536 ACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTCGCCATGTACCTGGAGCCCTGGC 1595 Query 19518 ACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCT 19577 |||| ||||| | || ||||| || || |||| || | |||||| | | Sbjct 1596 ACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGAGAG 1655 Query 19578 GTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636 | ||||| ||| |||||| ||||||| || ||||| |||||| ||| || |||| Sbjct 1656 CCAGGGACCTTTTCTACGGCC-TGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGC 1714 Query 19637 GACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGC 19696 |||| || ||| |||||||| || |||| ||||| || | ||| || || Sbjct 1715 AACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTGCTGGGGG 1774 Query 19697 GAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTC 19756 |||| |||| | || | ||| | || | ||||| ||||||| ||||| Sbjct 1775 GAGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGTTCAAGCGCGTGGTG 1834 Query 19757 CGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTAC 19816 ||| | | | | ||| || ||| || | |||| || || || || || ||| Sbjct 1835 AAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGTACGCCATAC 1894 Query 19817 ATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAG 19876 ||| ||||| |||||| ||| ||| || || |||| | ||| | |||||| Sbjct 1895 ATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAG 1954 Query 19877 TCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGT 19936 || |||||| || || |||||||| ||| ||| | || ||| || |||||| Sbjct 1955 TCCAGCAACCTCTGCACAGAAATCATCGAGTACACCAGCCACGATGAGGTAGCGGTGTGT 2014 Query 19937 AATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCA---AGGCCTCCTCCTTCGACTTTGC 19992 |||||||| || | ||| || | | ||||| || | || |||||| Sbjct 2015 AATCTGGCCTCAAT-TGCGCTCAACATGTACGTCACCCCGGAGCGGACTTTTGACTTTAA 2073 Query 19993 CAAATTGTACGAGGTGACCCGGG---TCGTCACGCGTAATCTGAATCGCGTCATCGATCG 20049 ||| || |||||| | |||||| | ||| |||| ||||||| Sbjct 2074 AAAACTGGCATCTGTGACCAAAGTAATCGTCAAG---AATTTGAACAAGATCATCGAAAT 2130 Query 20050 GAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106 |||| || || | |||| |||| ||||| || | ||||||| ||||||| | Sbjct 2131 TAACTACTATCCAGTGCCCGAAGCGG---AAAAGTCCAACAAGCGCCACAGGCCGATTGG 2187 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 || |||||||| || |||| || | ||||| | | | | | ||||| | | Sbjct 2188 AATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGA-AAGCA 2246 Query 20167 CA-AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGG 20225 | |||| | ||| || | |||||||||||| | |||||||| || ||||| Sbjct 2247 AAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGCCATCTACCACGCCGC---CCTGG 2303 Query 20226 AATCG---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282 | || ||||| || ||| ||| |||||| |||||||||| | || || |||| Sbjct 2304 AGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCCCG 2363 Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGG-------GCGTCACTGAGAATG-AGTT 20334 | |||| ||||| ||| |||||||||| || ||| || | || | Sbjct 2364 TCAGCAAGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGC-CCACCGA-ACTGCTGGA 2421 Query 20335 TTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGC 20394 |||| || |||| ||||| | |||||| | | ||| |||| | || Sbjct 2422 CTGGAAGCTGCTGAAGGAGAAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGC 2481 Query 20395 GCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTA 20454 || ||||| || ||||| |||||||||||| |||| ||||||||| | |||| | || Sbjct 2482 CCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTA 2541 Query 20455 CACGACCAACATCTAC 20470 ||| | |||||||||| Sbjct 2542 CACCAGCAACATCTAC 2557 >seq270369 Length=13262 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| ||| || ||||||||||| | |||| ||||||||| Sbjct 6573 CTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCT 6632 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||| ||||| ||||| || Sbjct 6633 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTC 6680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546610229038080