Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq95031 194 2e-44 seq109464 86.0 7e-12 >seq95031 Length=3790 Score = 194 bits (214), Expect = 2e-44 Identities = 485/728 (67%), Gaps = 14/728 (2%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||| || | || | |||| || || |||||| | || || || ||||| Sbjct 1243 TGAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAA 1302 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || || || ||| |||| |||||||||||| | || ||||| || ||| Sbjct 1303 CGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAG 1362 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||| ||||| ||||| ||| | || |||| ||||||||| | | || || Sbjct 1363 CATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGG 1422 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAAC----GGCACACCAATCAAGGGGACGA 53477 || ||| | || || | | | |||| || | ||| || || | Sbjct 1423 AATTGGTGT----GGCGATAAGCTGCATCAGAACAACGGGGAGCTACATCGCCGGCACCA 1478 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||||| | || | || |||| || ||||| | || | |||||||||||| || |||| Sbjct 1479 ACGGCAACTCCAACGGGGTCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTACG 1538 Query 53538 TCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 || ||||||| || ||| | | ||| | | |||||||| ||||| ||||| |||||| Sbjct 1539 TCGACCAGGGCGGCAACAAGAGACCAGGAG-CCTTCGCCATGTACCTGGAGCCCTGGCAC 1597 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 |||||| | | || || || ||||| ||| || | || ||| | | | Sbjct 1598 GCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGAGAGCC 1657 Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 | ||||| || ||| || |||||||| || ||||| |||||| | | ||||||| | Sbjct 1658 AGGGACCTTTTCTACGGC-CTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAA 1716 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTG 53774 |||||| |||| |||||||| || ||||||||||| || | | | ||| || || | Sbjct 1717 CGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTG-CTGGGGGG 1775 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCA 53834 ||||||| | || | || | || | ||||| | |||| ||| | Sbjct 1776 AGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGTTCAAGCGCGTGGTGA 1835 Query 53835 AGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACA 53894 |||| | || | ||| | || | || || |||| || || || ||||| |||| Sbjct 1836 AGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGTACGCCATACA 1895 Query 53895 TGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAAT 53954 || ||||| || | |||| |||||||||||| |||| | ||| |||||| | Sbjct 1896 TGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGT 1955 Query 53955 CGAGCAAC 53962 | |||||| Sbjct 1956 CCAGCAAC 1963 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 2470 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 2529 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 |||| | ||||| | |||||||||| ||| || ||| | || |||||| || Sbjct 2530 CATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGAT 2589 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || |||| |||||| Sbjct 2590 CGTCAACCCTCATCTGCTCAAAGACCTG 2617 >seq109464 Length=20334 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 |||||||||||||| | |||||| | |||||||| || || || ||||||||||| Sbjct 8163 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCGCCGTGCAACCTGGTTCCAAACTGA 8104 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| | ||||| | ||||||| |||||||| ||||| |||||| || Sbjct 8103 CCCAGA-GGCTGCAACAGGTTCAAGTTGTTGCTTCCCACGAAGTTCTGGGCCAAACCAAC 8045 Query 152148 AATCGT 152153 ||| || Sbjct 8044 AATGGT 8039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545305997273600