Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq95031 197 2e-45 seq148584 125 8e-24 seq270369 98.7 1e-15 seq234594 98.7 1e-15 seq147431 89.7 6e-13 >seq95031 Length=3790 Score = 197 bits (218), Expect = 2e-45 Identities = 744/1142 (65%), Gaps = 44/1142 (4%) Strand=Plus/Minus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||||| |||||||| | |||| ||||| || ||| |||||||||| Sbjct 2396 CCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTA 2339 Query 80598 CGGGCC---CTCCGTCTTGGCCAGCTCACA---CGACTCCATAAGGGCCGCGTGATAAAT 80651 ||||| ||| | ||||||||| || || |||| ||||| ||||| || || Sbjct 2338 GGGGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCCTCC---AGGGCGGCGTGGTAGAT 2285 Query 80652 GCACTCAAAGACGCCCTTGTTCA-CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710 | ||| |||| | |||| || | | |||| | | ||||||| | | || Sbjct 2284 GGCCTCGAAGATTTGAATATTCAGCAGC-TGAGCCTCTTTGCTTTCGAACGGGTAACGCA 2226 Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770 | | ||||| | || |||| || || ||||| || | ||||| | ||||||||||| Sbjct 2225 TGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGT 2166 Query 80771 TCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGC 80830 | || || || || || | ||| || ||||| | ||||||| ||||| || | Sbjct 2165 TGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATT-C 2107 Query 80831 GTG-TAACAACCCGTGTAACATCATG-AAGTTTCTGAAAGTCGAA--TTGGTTCC-CCTT 80885 || | || || ||| ||| ||||| | |||||| || | | ||| | Sbjct 2106 TTGACGATTACTTTGGTCACA-GATGCCAGTTTTTTAAAGTCAAAAGTCCGCTCCGGGGT 2048 Query 80886 CAC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCT 80943 || | ||| | || | || |||||||| ||||| || ||||| || | || Sbjct 2047 GACGTACATGTTG--AGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC-GTGGCT 1991 Query 80944 -GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 || |||||| |||||| ||||| | || ||||| || || ||||| || | || Sbjct 1990 GGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTG 1931 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| |||||| ||||| ||||| |||||| || ||||| || || ||| Sbjct 1930 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTG 1871 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCC 81119 |||| || | ||||| ||| | || | ||||| ||||| ||| ||| || || Sbjct 1870 GGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTT---GAACTTCCC 1814 Query 81120 TTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178 | | |||| || ||| ||||| ||||||| | || || | Sbjct 1813 CTGCTTCTCATAGGAGGTGTAGAGCTT-TTCGAACTCCTCCCCCCAGCACTCGTCCAACC 1755 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 ||||||||||||| || |||||||| |||||| || | |||| || |||||||| Sbjct 1754 CTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGA 1695 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| |||||||| ||| || ||| ||||| | | | | |||||| | || Sbjct 1694 ACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGG 1635 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 ||| | ||| || ||||| | | ||| || ||||| |||||||| |||| || Sbjct 1634 TGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGG 1575 Query 81359 CGATCGACCCCTTGCGAC----GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 ||| | | ||| | | ||| ||||||| ||||||||| || || ||| | Sbjct 1574 CGA-AGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 1516 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 || | || ||| |||| || || | || | ||||| || || |||| |||| Sbjct 1515 ACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCC 1456 Query 81475 TTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCA 81534 | | | | ||| || | | ||| || || || | | || || || | || Sbjct 1455 GTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCG 1396 Query 81535 CACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAA 81594 || | |||| || || ||||| || |||||||| || | ||||||| | |||| ||| Sbjct 1395 CATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 1336 Query 81595 CAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATG 81654 ||||| |||| ||| || || || | || || ||||| || || |||| ||||| || Sbjct 1335 CAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTG 1276 Query 81655 AA 81656 || Sbjct 1275 AA 1274 >seq148584 Length=286 Score = 125 bits (138), Expect = 8e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| || || || ||||| ||| | ||||| |||| Sbjct 1 TTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGTGATTCCATT 60 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct 61 GAAAACGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCTCCAGACCAGCAGCGTCTG 120 Query 27535 ATTTTTGCTGGTAAGCA 27551 || |||||||| ||||| Sbjct 121 ATCTTTGCTGGAAAGCA 137 >seq270369 Length=13262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| |||||||||| ||| || || || || ||||| || | |||||| Sbjct 6572 ACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGC 6631 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || || ||||| ||| ||| || | Sbjct 6632 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATT 6691 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||||| ||||| Sbjct 6692 CGATGATGGCGTACCACACCTGCTGGGCCTTCACCAC 6728 >seq234594 Length=1052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || |||||||| | | Sbjct 58 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||| || || || ||||||||||| || ||||| ||||||||| Sbjct 118 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 177 Query 27526 CAGCGTCTAATTTT 27539 ||| | || || || Sbjct 178 CAGAGGCTGATCTT 191 >seq147431 Length=1964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | | Sbjct 1618 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGCCCAGC 1677 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| || ||||||| || || ||||||||||| || Sbjct 1678 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGG 1721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568319788579840