Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq247423 170 2e-37 seq30452 122 7e-23 >seq247423 Length=3941 Score = 170 bits (188), Expect = 2e-37 Identities = 142/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || || Sbjct 2489 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 2430 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| ||||| || || || | |||||||||||||||||| ||||| ||||||| | Sbjct 2429 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 2370 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| |||||||||| || |||||| || || |||||||||||| || |||| Sbjct 2369 ACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTCT 2316 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| |||||||| || || || |||||||||||||| || ||||| ||||||||||| Sbjct 489 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 430 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 429 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 370 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 369 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 315 >seq30452 Length=9370 Score = 122 bits (134), Expect = 7e-23 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 110407 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 110466 |||||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 1744 TCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 1803 Query 110467 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 1804 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 1845 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 110574 CCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATACCGTT 110633 ||| ||||| | ||| || ||||||||||||| ||| |||||| | ||||||||| |||| Sbjct 5659 CCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACCGCCACGATAGCGTT 5718 Query 110634 CAGAATGAGGGGCATGGT 110651 ||||||| ||| ||| || Sbjct 5719 CAGAATGCGGGACATCGT 5736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404927668825344