Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq247423 131 2e-25 >seq247423 Length=3941 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| ||||||||||||| | ||||||||||| |||||||| | ||||| || Sbjct 328 ACAAACGCCAAGGAGCTCTCAGCGAAAGGGGTGAAGATTTGGGACGCCAATGGGTCCCGG 387 Query 34355 GACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTAC 34414 |||| |||||||| | ||| ||| || ||| ||||| |||||| |||| || || || Sbjct 388 AACTTCCTGGACAACCTGGGCTTCACAGATCGAGAGGAAGGCGACCTGGGACCCGTGTAT 447 Query 34415 GGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||||||||| ||||||||||| ||||| Sbjct 448 GGTTTCCAGTGGAGGCACTTTGGGGCCGAGTA 479 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| ||||||||||| ||||||||||| || || || || |||| |||||| ||||| Sbjct 479 TACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTCT 420 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 ||| || ||| ||| | |||||||| |||| || ||||| | |||||||| |||||| Sbjct 419 CGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTCCCAAATCTTC 360 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 ||||| | ||||||||||||| ||| || Sbjct 359 ACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGT 328 Score = 118 bits (130), Expect = 9e-22 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT-CGCGAA 34623 || || || || ||||| || || || ||||||||||| || || |||||||| ||| | Sbjct 2317 GACCTGCCCCTCATGGCTCTGCCACCCTGCCACACCCTGTGTCAGTTCTACGTGTGCG-A 2375 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 || |||||||| || |||||||| || || || || || ||||| | |||||||| || Sbjct 2376 CGGCGAGCTGTCGTGTCAGCTCTACCAGCGCTCTGGTGATATGGGTCTCGGGGTGCCTTT 2435 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| || || || || || || ||||| ||||||||||| || Sbjct 2436 CAATATCGCCAGCTATGCACTTCTCACCTACATGATCGCACA 2477 Score = 118 bits (130), Expect = 9e-22 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| || || || || || || ||||| |||||||| | ||| Sbjct 2477 TGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGCACCCCGAGACCC 2418 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG-ACGTAGAATTG 6738 || || || || || || |||||||| || |||||||| || | ||| |||||||| || Sbjct 2417 ATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGT-CGCACACGTAGAACTG 2359 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || ||||||||||| || || || ||||| || || || || Sbjct 2358 ACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTC 2317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446697784919040