Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq234594 111 4e-19 seq147431 95.1 3e-14 seq204445 89.7 1e-12 seq148584 86.0 1e-11 >seq234594 Length=1052 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 ||||| || | || ||||| || |||| |||||||||||||||||||| ||||||| Sbjct 191 AAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACG 132 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 || || |||||||| | ||||||||| || ||||| ||||| || ||||| ||||| Sbjct 131 TTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTA 72 Query 211101 ACAAACACCTGCAT 211114 || || | |||||| Sbjct 71 ACGAAGATCTGCAT 58 >seq147431 Length=1964 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| |||||||| || |||||||| | || ||||| Sbjct 1721 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCA 1662 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| || ||||| ||||| ||||| | |||||| || Sbjct 1661 AGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 1615 >seq204445 Length=11061 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||| ||||| |||||| Sbjct 7549 GGCAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGACACAAC 7490 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| ||||||| || || |||| || | ||| ||| | ||| |||| |||| | Sbjct 7489 TACGTGAGAAAGGTGGCTGAGACGGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 7433 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || |||||||| ||||| | || Sbjct 7432 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCCGACTTCAAGACCGAGCTCAGCCAGTCG 7373 Query 139999 GACTTTTTTGACCC 140012 ||| | || ||||| Sbjct 7372 GACATGTTCGACCC 7359 >seq148584 Length=286 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || ||||| || || || ||||| ||||| | || || ||||||||||| Sbjct 137 TGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGGATT 78 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || |||||||| |||| ||| | || ||||| || ||||| |||||||| Sbjct 77 TTAGCCTTGACGTTTTCAATGGAATCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCA 18 Query 211089 GTGAGAGTCTTTACAAA 211105 || || ||||| || || Sbjct 17 GTCAGGGTCTTCACGAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1155004948255680