Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq247423 156 3e-33 seq30452 113 4e-20 >seq247423 Length=3941 Score = 156 bits (172), Expect = 3e-33 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || ||| Sbjct 2489 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 2430 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| ||||| || || || | |||||||||||| ||||| ||||| ||||||| | Sbjct 2429 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 2370 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| |||||||||| || ||||| || || || |||||||| Sbjct 2369 ACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAG 2326 Score = 120 bits (132), Expect = 2e-22 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || ||||| ||||||||||| || || || | | |||| Sbjct 467 AAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTCTCGATCTGTGAAG 408 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| |||| | ||| || ||||||||||| ||||| ||||| ||| | Sbjct 407 CCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTCCCAAATCTTCACCCCTTTCGCT 348 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30168 |||||||| |||| |||||| || |||| |||| Sbjct 347 GAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 315 >seq30452 Length=9370 Score = 113 bits (124), Expect = 4e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 |||||||||||||| | ||| | ||||| |||||||||| ||||| || |||||||| Sbjct 1744 TCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 1803 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 1804 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 1845 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| ||||| ||| ||||| | ||| || ||||||||||||| ||| |||||| | Sbjct 5645 AGTCTAACCGGCGTCCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACC 5704 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATGGT 114534 ||||||||| ||||||||||| ||| ||| || Sbjct 5705 GCCACGATAGCGTTCAGAATGCGGGACATCGT 5736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404780969767552