Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq247423 156 3e-33 seq179759 104 2e-17 >seq247423 Length=3941 Score = 156 bits (172), Expect = 3e-33 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || || Sbjct 2489 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 2430 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| ||||| || || || | |||||||||||||||||| ||||| || |||| Sbjct 2429 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 2370 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| |||||||| | || |||||| || || |||||||||||| || |||| Sbjct 2369 ACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTCT 2316 Score = 132 bits (146), Expect = 4e-26 Identities = 135/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||| || || || |||||||| ||||| || ||||| ||||||||||| Sbjct 489 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 430 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 429 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 370 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 369 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 315 >seq179759 Length=2142 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 |||||| || ||||| || || || | ||| || | |||||||| | ||| Sbjct 1884 GGTGAATGGGTGGGGGAAATTCTACCTTCCCGAGATAGTAAGCATGCAGGTTGTAGGTGT 1825 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| ||| || | | || |||||||||| || ||||||||||| |||||| || Sbjct 1824 AGTGGAGGGGACCTCTTGCCTGAGTGACCAGCTCGTTCTGATGACCTGTGAGGACAGAAA 1765 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 |||||| | |||||| ||||| |||||||| |||||||| | ||| ||| | Sbjct 1764 GGTGTATGCCTATGATGGAGAGAAGCTGCATTTGGTGGCTTCAAGCCTGAGGCAGCTACA 1705 Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313 | | |||||| ||||| ||| | |||| ||||| | ||||||||||||||||| Sbjct 1704 TTACAACGGAATAAAGTATCCGGCACTGAAGAGATATTACAAAGGGGAGGCCTTCAAACA 1645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368249715267392