Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq95031 387 2e-102 seq270369 98.7 1e-15 >seq95031 Length=3790 Score = 387 bits (428), Expect = 2e-102 Identities = 1272/1963 (65%), Gaps = 27/1963 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| ||||| || | || | || |||||||| || Sbjct 2652 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 2593 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2592 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2533 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 2532 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2473 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 2472 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 2413 Query 77301 TCTGAAGG-TACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCC 77359 || | || | | | ||||| | ||||| || || || || || || | || || Sbjct 2412 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCC 2354 Query 77360 ATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 || || || || || || || | | || || || || ||||| |||| || Sbjct 2353 TGCGTACGTCTCGTAGGGGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCCTCCAGGGC 2297 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476 ||| || || | ||||| || | |||| || || || || | || || || Sbjct 2296 GGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAA 2237 Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 ||| ||| | | || || |||||||| || || || || || ||||| ||||| || || Sbjct 2236 CGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCT 2177 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 || | ||| ||||| ||| ||||| || | ||||| || ||||| || || || || Sbjct 2176 GTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTT 2117 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || | ||| | || | |||||| ||| ||||| ||| ||||| | | Sbjct 2116 GTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCG 2057 Query 77657 ATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 || | || ||||||| | || || || || |||||||| || |||||||||| Sbjct 2056 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC 1997 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 | ||| || | || || || || || || || || | ||||| ||||||||||| Sbjct 1996 GTGGCTGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATT 1937 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 |||||||||||||| | ||||| | ||| || || || || | || || || ||||| Sbjct 1936 CTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTC 1877 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATCATAGATTTGTAT 77891 |||| || ||||||| | | || || ||| || ||| || | || ||| | Sbjct 1876 TGTCTGGGACTCGATAACGGCGTGCC--ACAACTGCTGAGCCTTCACCACGCGCTTGAAC 1819 Query 77892 CGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCC 77951 || || | ||||| || || ||| ||| || || || ||||| || ||| Sbjct 1818 TTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCC 1759 Query 77952 AATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTC 78011 || || ||||| || || || ||||||| |||||||| | | || |||| ||| Sbjct 1758 AACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTC 1699 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATT 78070 || || || || || ||||| || || || || || || | || ||| || || || || Sbjct 1698 ATGAACAGGTCGGGGATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTT 1640 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 ||| || ||||| || || || || || || | | || | ||||| || || || || Sbjct 1639 TCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTA 1580 Query 78131 TATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 || || | |||| |||| || || || ||||| || | || | || ||||| || Sbjct 1579 CATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTT 1520 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACT 78250 |||||||||| ||| || | | ||||| || | || || || || | || || || Sbjct 1519 GTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCT 1460 Query 78251 TCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAG 78310 || ||| | || || || | | || ||||| || || || || || || Sbjct 1459 CCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGATGAG 1400 Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAG 78370 ||||| | |||| || ||||| || || || || ||||| || ||||| || || Sbjct 1399 GGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAG 1340 Query 78371 AAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATG 78426 || ||||| |||| || || || |||||||| || || | || || || | Sbjct 1339 GAAGCAGCTGGACAGCTGTGGCCTGTTG----GTTCCTGCGTTGAAGAGCGTGGGGGAGG 1284 Query 78427 CATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCC 78486 | || || ||||| || || || || || ||||| || ||||| |||| || |||||| Sbjct 1283 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCA 1224 Query 78487 ATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTAT 78546 | || || || || | || | ||| | ||| ||||| |||| || || || Sbjct 1223 TCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGC 1164 Query 78547 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 78606 || || ||||||| ||| || |||| ||| || || || || ||||||| || | Sbjct 1163 CGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGA 1104 Query 78607 AGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCA 78666 | ||||| ||| |||| || | || || || ||||||| | | ||| || || | Sbjct 1103 AATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGA 1044 Query 78667 TGACAGTAGTT-GAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAAT 78725 | | || || || || || || | ||||| || || | ||||| | Sbjct 1043 -GCGTCTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTAC 985 Query 78726 AAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCT 78785 | || ||||| || ||||| || | || || || || ||||| || || || || || Sbjct 984 AGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCG 925 Query 78786 ATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCT 78845 || | |||||| || || || || || || || | || || |||||| | || || Sbjct 924 ATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCA 865 Query 78846 GCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTC 78905 || || | | || | ||| | || ||||| || | || | || || || || ||| Sbjct 864 GCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTC 805 Query 78906 ATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATA 78965 |||| ||| | | | ||||| ||||| |||| ||||| ||| || || | || || Sbjct 804 ATGGTGATCTGGGCCGGATCCACAAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATG 745 Query 78966 CGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||| | |||||||| || || || || ||| | || ||||| Sbjct 744 CGACAGGTGATTTTGTCGAACATGACGCGCTCTTGGCGTCCAT 702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 76854 CCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATC 76913 ||| |||| |||||||| ||||||||| || | || || || || || || |||| Sbjct 3681 CCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGTTCAGG 3622 Query 76914 GACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA 76973 ||||| || || |||||| | || || | || || ||||| || | || ||||| || Sbjct 3621 GACTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCTGCCATCTTCAGTATAGTCTTCTGG 3562 Query 76974 GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||||||||| ||||| | | || || | ||||||||||| Sbjct 3561 GAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 3516 >seq270369 Length=13262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| | Sbjct 6580 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 6639 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| || || || | || || |||||||| |||| |||||||| || Sbjct 6640 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATGAT 6698 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || | ||| || || || |||||||||||||| ||||| || | |||||| | Sbjct 9650 CACCACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCA 9709 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | | |||||| ||||| |||| || || |||||||| | ||||| || | | | | Sbjct 9710 GGAGAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGT 9769 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 | | ||| | || ||||||||| | || || || || || || ||||| Sbjct 9770 CCAGCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 9818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692244128020480