Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq95031 370 2e-97 seq270369 84.2 3e-11 >seq95031 Length=3790 Score = 370 bits (410), Expect = 2e-97 Identities = 1262/1950 (65%), Gaps = 35/1950 (2%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| |||||| || | || | || |||||||| || Sbjct 2652 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 2593 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2592 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2533 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 2532 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2473 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 2472 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 2413 Query 75896 TCTGATGG-TACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCC 75954 || | || | | | ||||| | ||||| || || || || ||||| | || || Sbjct 2412 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCC 2354 Query 75955 ATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014 || || ||||| | ||| || | || || ||||| |||||||| | || | Sbjct 2353 TGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 2294 Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 || || || | ||||| || | |||| || || || || || || || || Sbjct 2293 GTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGG 2234 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 ||| | | || || || ||||| || | || || || ||||| ||||| || || || Sbjct 2233 GTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTG 2174 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 | ||| ||||| |||| ||||| || | || || || ||||| || || || || || Sbjct 2173 GCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTT 2114 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254 | ||| |||| | |||||| ||| ||||| ||| ||||| | | || Sbjct 2113 CAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCGCTC 2054 Query 76255 TA---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TA 76309 | || |||| || || || || || || |||||||| || |||||||||| | Sbjct 2053 CGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTG 1994 Query 76310 GCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 || ||| || | || || || ||||| || || || ||||||| || || ||||| Sbjct 1993 GC--TGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 1936 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 |||||||||||||| |||| || | ||| || || || | | || || |||||||| Sbjct 1935 TGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCT 1876 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATTATAGATTTGTATC 76487 |||| || ||||||| | | || || ||| || ||| || | | ||| | Sbjct 1875 GTCTGGGACTCGATAACGGCGTGCC--ACAACTGCTGAGCCTTCACCACGCGCTTGAA-- 1820 Query 76488 GCTTCTC--TCTT-TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 |||| | ||| ||||| || || | | ||| || || || ||||| || | Sbjct 1819 -CTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGT 1761 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 |||| || || || || || |||||||||| ||||| || | | || || | | Sbjct 1760 CCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCT 1701 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCA 76663 |||| || || || || ||||| || || || || || || | || ||| | || || Sbjct 1700 TCATGAACAGGTCGGGGATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCC 1642 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 ||||| || ||||| || || || ||||| || | | || | ||||| || || || Sbjct 1641 TTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGG 1582 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || || || | | || |||| || || || ||||| || | || | || ||||| Sbjct 1581 TACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTG 1522 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || |||||||||| ||| || | | ||||| || | || || || || | || || Sbjct 1521 TTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAG 1462 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 || || || | || || || | | || ||||| || || ||| ||||| Sbjct 1461 CTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGATG 1402 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963 || || || | |||| ||||| || ||||| || || || || || ||||| || Sbjct 1401 AGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 1342 Query 76964 AGAAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGA 77019 || || ||||| |||| || || || |||||||| || || | || || || Sbjct 1341 AGGAAGCAGCTGGACAGCTGTGGCCTGTTG----GTTCCTGCGTTGAAGAGCGTGGGGGA 1286 Query 77020 TGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC 77079 || || |||||||| || || || || || ||||| || ||||| |||| || || || Sbjct 1285 GGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTC 1226 Query 77080 CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT 77139 | | || || || || | || | ||| | ||| ||||| ||||| || | || Sbjct 1225 CATCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTT 1166 Query 77140 ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 77199 || || ||||||| ||| || |||| ||| || || || || ||||||| || Sbjct 1165 GCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGA 1106 Query 77200 AAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATC 77259 || ||||| ||| |||| || |||| || || ||| || | | | ||| || || Sbjct 1105 GAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTC 1046 Query 77260 CATGACAGT---GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTT 77316 || || | || || || || || | ||||| || || | ||||| Sbjct 1045 ---GAGCGTCTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTT 989 Query 77317 AAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATAC 77376 | | ||| ||||| ||||| || || | || || || || ||||| || || || || Sbjct 988 GTACAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGAC 929 Query 77377 GGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTAT 77436 ||| || | ||||| || || || ||||| || || | || ||| ||||| | || Sbjct 928 GGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGAT 869 Query 77437 TTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAAC 77496 || || || | || || | || | || || || ||| | || | || || || || Sbjct 868 CTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCAC 809 Query 77497 TTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT 77556 ||||||| || | | ||||| ||||| || | ||||| || || || | || Sbjct 808 CTTCATGGTGATCTGGGCCGGATCCACAAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTG 749 Query 77557 AATACGAGATGTGATTTTATCAAACATGAC 77586 || ||| | |||||||| || |||||||| Sbjct 748 GATGCGACAGGTGATTTTGTCGAACATGAC 719 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 75449 CCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATC 75508 ||| |||| |||||||| || |||||| || | || || || || || || |||| Sbjct 3681 CCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGTTCAGG 3622 Query 75509 GACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA 75568 ||||| || || |||||| | || || | || || ||||| || | || ||||| || Sbjct 3621 GACTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCTGCCATCTTCAGTATAGTCTTCTGG 3562 Query 75569 GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||||||||| ||||| | | || || | ||||||||||| Sbjct 3561 GAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 3516 >seq270369 Length=13262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||||||||| ||||| || | ||||| || || ||||| || ||||||||||| || Sbjct 6580 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 6639 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || || | |||||| || || | | || || || ||||| |||| |||||||| || Sbjct 6640 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATGAT 6698 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| ||||| || || || ||||||||||| || || || | ||| Sbjct 7768 GTGCCAGCATTGAACAGAGTAGGTGAGGCGTGGGTGAACCATTTCTCTGACAGCAAGTTG 7827 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || ||||| |||| || || || | || |||||| || ||||| || | ||| | | Sbjct 7828 TAGGTCTCAATGGCTGCATCAATGTCTCTTTCATGAATCCCGACAGCCACTCTCATTAGC 7887 Query 77114 ATATGCTGAGG 77124 || ||||| || Sbjct 7888 ATGTGCTGGGG 7898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710445973770240