Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq136 499 4e-136 seq119 95.1 1e-14 >seq136 Length=1264375 Score = 499 bits (552), Expect = 4e-136 Identities = 1281/1942 (66%), Gaps = 19/1942 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || ||||| | | |||||| || | | | || ||||| ||||| Sbjct 717518 TTCTTCATCTCCTCGTTCCACAGTCCTCTCTCCGTCAGGTCCTTGAGCAGATGAGGATTG 717459 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| ||||| || | || || || ||||| || || || || || | || Sbjct 717458 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTTGTGTAGGCCTCA 717399 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | |||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 717398 ATAGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 717339 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | ||| || || || || | | ||| | || || Sbjct 717338 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCGCACAGG 717279 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 || | || | | | || || | || || ||| | || | Sbjct 717278 TCAGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGGTGCCCTTGCTGACAGGAGAGC 717221 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || |||| || ||||| || || || | || || || || || ||||| | || Sbjct 717220 CTTCATACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTTGCCTCCAGGGCGG 717161 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || ||||| || ||||| | | || || || || || |||| ||||| | Sbjct 717160 CGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGG 717101 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | | | | || || || || || || || || |||||||| || || || || | | Sbjct 717100 GGTGACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACCGATTCCTATTGGCCGGT 717041 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || | || ||||| | ||||| || ||||| ||||| || || | Sbjct 717040 GGCGCTTGTTGGACCTCTCGGCTTCAACCACTGGATAGTAGTTAATGTCTATGATCTTGT 716981 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 | ||||| |||| ||||||||| ||||| |||||| ||| ||||| |||| Sbjct 716980 TCAGGTTCTTGACGATTACTTTGGTCACATATGACAGTTTTTTAAAGTCAAAG-GTCCGC 716922 Query 53685 CTA----TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-- 53738 | | || ||||||| | || || || ||||||||||| || || ||||||| Sbjct 716921 TCAGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACCGCCACCTCATCG 716862 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | || | |||| | || || ||||| || || || || |||||||| || | || Sbjct 716861 TGGCTGGTG--TATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGAT 716804 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | || || || ||||| |||| || || || || || || ||| | || ||||| |||| Sbjct 716803 TCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTTT 716744 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 | |||||||||| ||||| || | ||| || ||||||| | | ||| | Sbjct 716743 CTGTCTGGGATTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACTCGCTTGACCC 716684 Query 53919 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATT-GTCC 53977 || || | || ||| || || | | |||||||| || ||||| |||| |||| Sbjct 716683 TCCCCTCCTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCTCCCCCCAG-CATTCGTCC 716625 Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 | || || || || | ||||||||||| ||||| ||| || || ||||| ||| Sbjct 716624 AGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTC 716565 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 || || | ||||| ||||| || || ||| |||||||||| || || || || || Sbjct 716564 ATGAACAAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTTGCTCATCCTTA 716505 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || || ||||| || || || ||||| | | | ||| | ||||| || |||| ||| Sbjct 716504 CCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTAC 716445 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | |||| || | ||||| || ||||| || | || | || ||||| || Sbjct 716444 ATGGCGAAGGCTCCCGGTCTCTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTG 716385 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 |||||||||| ||| || | | |||||| || || || || || | ||| ||||| Sbjct 716384 TAAACTCTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGCCAGCGATGTAGCTC 716325 Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 || | | | || || | | | ||| || || || ||| ||| ||||| | Sbjct 716324 CCCGTTGATCTGATGCAGCTGACCGCCACACCGATTCCTCCAGCCGATTTGGAGATGAGG 716265 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || | || | ||| ||||| ||||| || || || |||||| ||||| ||| || Sbjct 716264 GCACAATGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATGGCAAGCAGG 716205 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || |||||||||| || | | | ||||| || || || | |||||||||||||| Sbjct 716204 AAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGTGTAGGAGAAGCGTGG 716145 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517 || ||||| | || || || || ||||| ||||| || |||| || ||||| || Sbjct 716144 GTGAACCACCTCTCTGACAGAAGGTTGTAGGTCTCAATGGCTGCATCGATATCAGTTTTG 716085 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577 || || || || | || | ||| | ||||||||| || | ||| | | ||| | | Sbjct 716084 TGGATGCCGACAGACACTCTCATGAGCATGTGCTGCGGACGCTCAGCCACTTTGCCGGTG 716025 Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 || |||| || ||| || |||| ||| || || ||||| ||||||| || || ||| Sbjct 716024 ATCTTCAACAGGTACGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCT 715965 Query 54638 CGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTA 54697 | |||||||| || | |||||||| || || | | ||| | || | ||| Sbjct 715964 CTGTCGTAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACAATGTCGAGGGT- 715906 Query 54698 ATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATC 54756 | ||| || || || || || ||||| ||| ||| |||| ||||| | | || Sbjct 715905 CTCCTTGGAGATCATGGGGGAGTGTTTTTTATTCAGAGGGTTGATGTAGTTGTACAGGTC 715846 Query 54757 CTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 54816 || |||||| ||||| || | ||| || || |||||||| || || || || || || | Sbjct 715845 CTCCATCACCTCACTGAACACTTTCTTCGTCTCTTTGTGCAGGTTGGAAACAGCGATCCG 715786 Query 54817 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGT 54876 || || || ||||| || || || |||| || || |||||| || || || |||| Sbjct 715785 TGCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCTGC 715726 Query 54877 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||| | || || || || ||||| | || | || || || |||||||| | Sbjct 715725 CAGCGTGTCGAGCTCCACGGTGGTGACTCCGCTGTACAAACCCTGAATCACCTTCATGGT 715666 Query 54937 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAG 54995 |||| || || | | |||| ||| | ||||| || || |||| || |||| Sbjct 715665 GATTTGGGCCGGGTCCACAAAGTCAGAGTTCAGTCCATAGCA-AAGCTTCTGGATGCGAG 715607 Query 54996 ATGTGATTTTATCAAACATGAC 55017 | ||||||||||| |||||||| Sbjct 715606 AGGTGATTTTATCGAACATGAC 715585 >seq119 Length=8001379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 |||||| ||||| |||||||| | |||||||| || ||||| || || || ||||| | Sbjct 7003604 TATCTCTGTGCATAGATTACTGGATTTGATGGTGCCCAAATTCTGCTGGTTGCTCTTCCT 7003545 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 || || || ||||| || || ||| |||| ||||||||||| |||| || || || || Sbjct 7003544 ATTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTCTGTCTGTGACTCGATGAT 7003485 Query 53878 CGCTTTCCAGAC 53889 || | ||| || Sbjct 7003484 GGCATACCACAC 7003473 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | ||||| || || || || ||||| || || || |||| ||| Sbjct 7002315 GTGCCAGCATTGAACAGTGTAGGTGAGGCATGGGTGAACCACTTCTCTGACAGTAAGTTG 7002256 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || |||| || || || | || |||||| || || || || | ||||||| Sbjct 7002255 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACAGCCACTCTCATTAAC 7002196 Query 54545 ATGTGCTGAGGTCTTTCA 54562 |||||||| ||||| ||| Sbjct 7002195 ATGTGCTGGGGTCTCTCA 7002178 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||||||||||||||| || || ||||| | ||| | || || ||||||| || || Sbjct 7003075 CACTCGTTTCATAAAGAGGTCCGGGATCCACATAGCGAAGAACAGGTCTCTGGCCCTCTG 7003016 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || ||||| ||||| || | || | ||| | | | ||| |||||||||| Sbjct 7003015 CTCCTCTTTACCTGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGG 7002956 Query 54148 TTCCA 54152 |||| Sbjct 7002955 CTCCA 7002951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718750136320