Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq136 145 7e-30 seq166 113 4e-20 >seq136 Length=1264375 Score = 145 bits (160), Expect = 7e-30 Identities = 303/441 (69%), Gaps = 9/441 (2%) Strand=Plus/Minus Query 133511 GGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGT 133569 ||||||||||||||| ||||||| ||||| |||| ||||| || ||| || || || Sbjct 717189 GGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGAT-GT 717131 Query 133570 TGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGC 133627 ||| | | ||| || ||| ||| || ||| | || || | || | || || || || Sbjct 717130 TGA-GCAGCTGAGCCTCGGGGCTTTCAAAGGGG-TGACGCATCAGGATGAAGGCATCAGC 717073 Query 133628 CAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGC 133687 ||||||||| | |||| || || || || || || ||| |||||| | || | Sbjct 717072 CAAACCCTGAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTTCAAC 717013 Query 133688 CGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAA 133747 | ||||||| ||| | ||| ||||||||||| || || |||||| | ||| |||| Sbjct 717012 CACTGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCAC 716953 Query 133748 ATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGC 133807 || | ||| | ||||||| ||| || | || |||| || |||||| || Sbjct 716952 ATATGACAGTTTTTTAAAGTCAAAGGTCC--GCTCAGGGGT-GACGTACATGTTGAGAGC 716896 Query 133808 AATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGC 133867 || ||| |||||||| || ||| ||| | | | | || | || || || | Sbjct 716895 GATGGAGGCCAGATTACACACCGCCACCTCATCGTGGCTGGTGTATTCAACAATTTCTGT 716836 Query 133868 GCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATG 133927 ||||||||||||||||||||||||||||| ||| | || ||||| | ||||| Sbjct 716835 GCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGC 716776 Query 133928 ATCCTTGTATAGCATGTACGG 133948 || ||||| ||||||||||| Sbjct 716775 GTCTTTGTACAGCATGTACGG 716755 >seq166 Length=972737 Score = 113 bits (124), Expect = 4e-20 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | ||||| ||| || | Sbjct 969432 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 969373 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| |||||||||||||||| || ||||| ||||| || ||||| | Sbjct 969372 GCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGA 969313 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | || | |||||| || ||||||||| | ||| | || |||| Sbjct 969312 TTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGC 969253 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || || || || || || ||||||||| || Sbjct 969252 CAGTGAGGGTCTTCACGAAGATCTGCATGCCT 969221 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | ||||| || || | Sbjct 969660 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCA 969601 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||||||||||||||| || || || ||||| ||||| || | Sbjct 969600 GCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGA 969541 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | |||||| || |||||||| | || | || |||| Sbjct 969540 TCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCGACCTCCAGAGTGATGGTCTTGC 969481 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || || || || || || ||||||||| || Sbjct 969480 CAGTGAGGGTCTTCACGAAGATCTGCATGCCT 969449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828369673728