Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq173 93.3 8e-14 seq170 84.2 4e-11 >seq173 Length=10147857 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 51893 GAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCA 51952 |||| | |||| ||| | || || ||||| || || ||| |||| || || ||||| | Sbjct 3515427 GAGCTCTGTGGTGGTATTTCATCTCTAAAGGCATCGAGTACCTGGACACAGTGTTTTTTA 3515486 Query 51953 TACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGT 52012 | || ||||||||||| || ||||||| || || || || || || || | || |||| Sbjct 3515487 TCCTGAGGAAAAAATTCAACCAGGTTACCTTCCTGCATGTCTACCACCACTGCACCATGT 3515546 Query 52013 TTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | || || | ||||| || || |||||| | || ||||| ||| Sbjct 3515547 TCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 3515590 >seq170 Length=9359804 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 135747 GACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAA 135806 ||||| | | ||||||||||||||||| | ||| ||| | ||||| ||||||||||| Sbjct 525022 GACGTGTGTGGTAAGAGCCTGGGATACCAGTCGACCTCTCCTCTTCTGCCCTGCAATGAA 525081 Query 135807 TACTCTTATGTGGGAACATCCTATTACAG 135835 ||| ||||||| ||||||| ||||||| Sbjct 525082 TACGGCTATGTGGCAACATCCCATTACAG 525110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923192368655360