Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq170 324 1e-83 seq179 131 1e-25 >seq170 Length=9359804 Score = 324 bits (358), Expect = 1e-83 Identities = 620/903 (69%), Gaps = 12/903 (1%) Strand=Plus/Plus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| ||||| || || |||||||| ||| || || |||||||| ||||| ||||| Sbjct 985127 TTCATTACAGTGCCT-CTCAGTAAAGAGGAGAAGGATTTTCCCATTGCTTACTCCATGGT 985185 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | ||||||||| |||||| | ||||| || || || ||||| | ||||| |||||||| Sbjct 985186 GATCCATGAGAGGATTGAGATGTTTGAGCGACTTCTACGAGCTATTTATGCTCCTCAGAA 985245 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCC-CCAGAGACTTTCAAAGAGGCGGTCAAGG 107853 ||| ||||| || || ||||| || ||| | | ||| |||| | |||| || |||| Sbjct 985246 CATTTACTGCGTGCATGTGGACCAAAAATCCTCGAAAGAATTTC-AGCAGGCTGTGAAGG 985304 Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913 | || ||||| || | |||||||| || | || ||||| || | ||||| |||| Sbjct 985305 CTATCATTTCATGTCTTCCCAATGTGTTTGTAGCAAGTAAATTAGAAAGCGTGGTATATG 985364 Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCT--C 107971 |||| |||||| ||||||| || || |||||||| ||| ||||| |||| || || | Sbjct 985365 CCTCATGGTCCCGAGTGCAGGCAGATCTGAACTGCATGAAAGACCTGCT---GAACTCGC 985421 Query 107972 AGTGCCA-TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATG 108030 | ||| |||| |||| | || || || || ||||||||||||||||| || |||||| Sbjct 985422 ACATCCAGTGGAGGTACCTGCTCAACACCTGTGGGACAGACTTCCCCATTAAAACCAATA 985481 Query 108031 CCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTAC 108090 |||||||| || || ||| |||| || | ||||| |||||| |||||| Sbjct 985482 GAGAGATGGTTAAAGCGCTGAAGGCCCTGAATGGAAGAAACAGCATGGAGACTGAGGCCA 985541 Query 108091 CTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACC 108150 | ||||| ||| ||| |||||| | || | | | || || |||| | ||| Sbjct 985542 CCAGTGAGTACAAGAAAGGCCGCTGGCAGTATCATCACAATGTCACCAACACTGTTGACC 985601 Query 108151 CTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCT 108210 || | ||| ||| |||||| || | | ||||||||| |||||||||||| Sbjct 985602 GGACAAATGAGAGGAAAAGCCCTCCACCCATTGACAGCCCCATGTTCTCAGGGAATGCCT 985661 Query 108211 ATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC 108270 | ||||||| | | |||||||||| |||| || | || | ||| | || Sbjct 985662 ACTTTGTGGTCACAAGAGCCTTTGTGAAACACGTGATGCGGGACAGAGAGGTCCAGAAAC 985721 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 | | || |||| || ||||| || || || ||||| ||||| |||||||| || ||| Sbjct 985722 TTCTGGAGTGGGAGAAGGACACATACAGTCCAGACGAGCACCTGTGGGCCACTCTACAGA 985781 Query 108331 GTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGA 108390 | || | | ||||| || |||||| | || ||||||| | || ||||||||| Sbjct 985782 GGATGCCCTCAGTTCCTGGATCAGTTCCTGCCAACATCAAGTATGATATGTCAGACATGC 985841 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 ||| |||| | | || |||||| || | |||||||| | | || || | Sbjct 985842 AAGCCCTCGCTCGTGTTGTGAAGTGGAGCTATTTAGCAGGAGATGTTAAAAAAGGAGCCC 985901 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 | || | || ||| ||||| | | | || | || | ||||| ||||| ||| Sbjct 985902 CGTACGATCCTTGCACTGGAGCTTACAGACGAGCTGTTTGTGTGTACGGAGCCGGTGACA 985961 Query 108511 TGTACTGGATTCTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGAT 108569 | | ||| | || ||| | || || ||||| ||||| |||||||| ||| | | ||| Sbjct 985962 TCCAGTGGCTCCT-GAGACAACAACAACTCTTTGCAAATAAGTTTGATCCGGAGATCGAT 986020 Query 108570 GAT 108572 ||| Sbjct 986021 GAT 986023 >seq179 Length=4582149 Score = 131 bits (144), Expect = 1e-25 Identities = 212/300 (71%), Gaps = 19/300 (6%) Strand=Plus/Plus Query 108269 ACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 |||| |||| |||| |||||||||||| || || || ||| |||||||| ||| |||| Sbjct 633431 ACTGATTGAGTGGGCCAAAGACACCTACAGTCCTGATGAATTTCTCTGGGCAACCATTCA 633490 Query 108329 GCGTGCTCCGTGG-ATGCCTGGCTCTGTTCCTAG---CCACCCCAAGTATCACATCTCAG 108384 ||| ||| ||| | |||||||| | | || ||||||||| ||| |||| |||| Sbjct 633491 GCG-AATCCCTGGTGTTCCTGGCTCAG---CGAGGCCCCACCCCAAATATGACATGTCAG 633546 Query 108385 ACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA------ 108438 ||||| |||||| || | || || |||||||||| || ||||| |||| Sbjct 633547 ACATGCATGCCATTGCACGACTGGTGAAGTGGCAGTGGCATGAGGG----GTCACTGGGT 633602 Query 108439 GCA-TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 || ||| ||| || || || ||||| |||| ||| | ||||| | ||| Sbjct 633603 TCACTGGAGGCAGTGTACCCAGAGTGTCATGGAAACCATGTCAGGTCAATCTGTGTATAC 633662 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || || ||||| | ||||| || || | ||||||||||| || |||||||||||| Sbjct 633663 GGTGCTGGAGACCTAAAATGGATGCTTAAGCAGCATCACCTCTTTGCCAACAAGTTTGAC 633722 Score = 116 bits (128), Expect = 3e-21 Identities = 209/300 (70%), Gaps = 19/300 (6%) Strand=Plus/Plus Query 108269 ACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 |||| |||| |||| |||||||||||| || || || ||| |||||||| ||| |||| Sbjct 625459 ACTGATTGAGTGGGCCAAAGACACCTACAGTCCTGATGAATTTCTCTGGGCAACCATTCA 625518 Query 108329 GCGTGCTCCGTGG-ATGCCTGGCTCTGTTCCTAG---CCACCCCAAGTATCACATCTCAG 108384 ||| ||| ||| | |||||||| | | || ||||||||| ||| |||| |||| Sbjct 625519 GCG-AATCCCTGGTGTTCCTGGCTCAG---CGAGGCCCCACCCCAAATATGACATGTCAG 625574 Query 108385 ACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA---GCA 108441 ||||| |||||| || | || || |||||||| || ||||| |||| | Sbjct 625575 ACATGCATGCCATTGCACGACTGGTGAAGTGGCATGGTCATGAGGG----GTCACTGGGT 625630 Query 108442 TGGGGGCGCCTTATGCACCC----TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 | | || | || |||| || ||||| |||| ||| | ||||| | || Sbjct 625631 TCTGTGCACGCAGTGTACCCAGAGTGTCATGGAAACCATGTCAGGTCAATCTGTGTATAT 625690 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || || ||||| | ||||| || || | ||||||||||| || |||||||||||| Sbjct 625691 GGTGCTGGAGACCTAAAATGGATGCTTAAGCAGCATCACCTCTTTGCCAACAAGTTTGAC 625750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348267170102016