Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq136 511 6e-140 seq65 102 1e-16 seq119 98.7 1e-15 seq142 87.8 2e-12 >seq136 Length=1264375 Score = 511 bits (566), Expect = 6e-140 Identities = 1304/1977 (66%), Gaps = 27/1977 (1%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 ||||||||||||| | | || | | ||||| ||||| || ||||| | | ||| Sbjct 717549 CTGAATGGATCCATTGTGAGCTATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCTCT 717490 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || | | | || ||||| || || || | || || ||||| || | || || Sbjct 717489 CTCCGTCAGGTCCTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCGGAGAGGACCCT 717430 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || || || || | || | ||||| || || |||| || || || Sbjct 717429 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGC 717370 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || ||||| || |||| || | || || || | |||| | ||| Sbjct 717369 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGAT 717310 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNN 62586 || || || || | | ||| | || || || | || | | ||| Sbjct 717309 CTTCTCCTTCAGCAGCTTCCAGTCGCACAGGTCAGTGGGCGTCTTCTCCCACATGTCG-- 717252 Query 62587 NNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTT 62646 || || || | || || ||| | || ||| |||| || || || || || Sbjct 717251 -----TACTGGAGGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGA 717197 Query 62647 CCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCT 62706 || | || || | || || ||||| | || |||| || ||||| |||||||| | Sbjct 717196 GCTCGGCGGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGT 717137 Query 62707 TCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62766 | || || || || || ||||| ||||| || | | | || || || || | Sbjct 717136 GGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCAT 717077 Query 62767 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62826 | || || || |||||||| || || || || | || | ||| || || | || |||| Sbjct 717076 CAGCCAAACCCTGAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTT 717017 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 | | ||||| || ||||| ||||| || || || || || |||| ||||||||| Sbjct 717016 CAACCACTGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGG 716957 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATG 62943 ||||| |||||| ||| ||||| ||| || | || ||||||| | | Sbjct 716956 TCACATATGACAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAG 716897 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTC 63001 | | || |||||||||||||| || ||||||| | || | |||| | || || Sbjct 716896 CGATGGAGGCCAGATTACACACCGCCACCTCATCGTGGCTGGTG--TATTCAACAATTTC 716839 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||| || || || || ||||| || || | ||| || || || ||||| |||| || Sbjct 716838 TGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCA 716779 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 || || || || || ||| | || ||||| ||||| |||| ||||| ||||| || | Sbjct 716778 GGCGTCTTTGTACAGCATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATA 716719 Query 63122 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATA 63181 ||| || ||||||| | | ||| |||| || | || ||| || || Sbjct 716718 CCACACCTGCTGAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCATATTTGGTGTA 716659 Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAATCTAGGACATTCATCCGGACACA 63240 | | || ||||| || ||||| |||| ||||| | || || || | |||||||| Sbjct 716658 GAGCTGCTCAAACTCCTCCCCCCAG-CATTCGTCCAGCCCGGGGCACTCGTTCGGACACA 716600 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 ||| ||||| ||| || || ||||| ||||| || | ||||| ||||| || | Sbjct 716599 TCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGTG 716540 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 | ||| |||||||| | || || || || || || || ||||| || || || |||| Sbjct 716539 CATAAAAAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTGTTCTTCTTCAGCTCCAGGA 716480 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 | | | | ||| | ||||| || |||| ||| ||||| | |||| || | |||| Sbjct 716479 AGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGT 716420 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 | || ||||| || | || | || ||||| || |||||||||| ||| || | | || Sbjct 716419 TGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGAC 716360 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTG 63540 | || || | || || || || | ||| |||| || | | | || || | | Sbjct 716359 CATTAGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCG 716300 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | ||| ||||| || ||| ||| ||||| | || || | || | ||||||||| | Sbjct 716299 CCACACCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAA 716240 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 ||||||| ||||| ||||| ||||| ||| || || |||||||||| || | | Sbjct 716239 TGCCTTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGT 716180 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 | ||||| || || || | |||||||||||||| || ||||| | || || || || | Sbjct 716179 TGGTTCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGACAGAAGGT 716120 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780 |||| |||||||| |||| || ||||| || || || || || | || | ||| | Sbjct 716119 TGTAGGTCTCAATGGCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGA 716060 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||||||||| || | ||| | | |||| | | || ||||||| ||| || |||| Sbjct 716059 GCATGTGCTGCGGACGCTCAGCCACTTTGCCGGTGATCTTCAACAGGTACGACCGCTCCA 716000 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 63900 ||| || || ||||| ||||||| || || |||| |||||||| || |||| |||| Sbjct 715999 GAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGCCGAGTTGA 715940 Query 63901 GCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGT 63959 | || || | | ||| || || | ||| | ||| || || || || || ||| Sbjct 715939 GGCGGTCTTTGTTCTCAAGAACAATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGT 715881 Query 63960 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 64019 || ||| ||| || | |||||| | | ||||||||||| ||||| || | ||| Sbjct 715880 TTTTTATTCAGAGGGTTGATGTAGTTGTACAGGTCCTCCATCACCTCACTGAACACTTTC 715821 Query 64020 tttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGA 64079 || || || ||||| || || || | || || | || || || ||||| || || || Sbjct 715820 TTCGTCTCTTTGTGCAGGTTGGAAACAGCGATCCGTGCAGCGAGGATGGCGTAGTCGGGG 715761 Query 64080 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTT 64139 |||| || || |||||| || || || |||||||| ||||| | || || || || Sbjct 715760 TGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCTGCCAGCGTGTCGAGCTCCACGGTGGTG 715701 Query 64140 ACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCC 64199 ||||| | || | || ||||| |||||||| | |||| || || | | || Sbjct 715700 ACTCCGCTGTACAAACCCTGAATCACCTTCATGGTGATTTGGGCCGGGTCCACAAAGTCA 715641 Query 64200 GTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64255 | ||| | |||||||| || |||| || ||||| ||||||||||| |||||||| Sbjct 715640 GAGTTCAGTCCATAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 715585 >seq65 Length=22759279 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||||| Sbjct 20259748 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20259689 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | |||||| || || || ||||||||||| || ||||| || |||| Sbjct 20259688 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20259629 Query 33724 C 33724 | Sbjct 20259628 C 20259628 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||||| Sbjct 20277584 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20277643 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | |||||| || || || ||||||||||| || ||||| || |||| Sbjct 20277644 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20277703 Query 33724 C 33724 | Sbjct 20277704 C 20277704 >seq119 Length=8001379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||||| || || || || ||||| || || || |||| ||| Sbjct 7002315 GTGCCAGCATTGAACAGTGTAGGTGAGGCATGGGTGAACCACTTCTCTGACAGTAAGTTG 7002256 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||||||| |||| || || || | || |||||| || || || || | ||||||| Sbjct 7002255 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACAGCCACTCTCATTAAC 7002196 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 |||||||| ||||| ||| ||| Sbjct 7002195 ATGTGCTGGGGTCTCTCAGCAA 7002174 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 |||||| ||||| |||||||| | ||||| || || ||||| || || || ||||| | Sbjct 7003604 TATCTCTGTGCATAGATTACTGGATTTGATGGTGCCCAAATTCTGCTGGTTGCTCTTCCT 7003545 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 || || || ||||| || || ||| |||| ||||||||||| |||| || || || || Sbjct 7003544 ATTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTCTGTCTGTGACTCGATGAT 7003485 Query 63116 CGCTTTCCAGAC 63127 || | ||| || Sbjct 7003484 GGCATACCACAC 7003473 >seq142 Length=12874233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || || || | || || || | || || |||||||| ||||| | ||| | Sbjct 6159063 CCTCATCCCTGCTTATCAGCTCATTGGAGTAGGTAAGCCCGGGCATCAGGCCTCTCTTCT 6159122 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||| | |||| ||||||||| || || |||||||||||||| || || ||||| | Sbjct 6159123 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAAAG 6159182 Query 33724 C 33724 | Sbjct 6159183 C 6159183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814576875520