Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq136 201 1e-46 seq65 93.3 4e-14 seq142 89.7 5e-13 >seq136 Length=1264375 Score = 201 bits (222), Expect = 1e-46 Identities = 907/1427 (64%), Gaps = 9/1427 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || || ||||| || | |||||| ||||| || | || || | || || || ||||| Sbjct 717470 AGATGAGGATTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTT 717411 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||||| ||||| || || | | || || | || || || || ||||| Sbjct 717410 GTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATC 717351 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || |||| || || | || ||| || || ||| Sbjct 717350 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTC 717291 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || || || | || || || |||| |||||| || || || || | || || || Sbjct 717290 CAGTCGCACAGGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGGTGCCCTTGCTG 717231 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | ||||| | | ||| ||||| || || ||| || || ||||| || | Sbjct 717230 ACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTTGCC 717171 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || ||||| || || || || || || || || || || | | | || || | Sbjct 717170 TCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGCCTCGGGG 717111 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || || || | | | || | || || ||||||||||||||||||||||||| ||| Sbjct 717110 CTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACCGATTCCT 717051 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || | || ||| || || || | ||| | ||||||||| || || || ||| Sbjct 717050 ATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTTCAACCACTGGATAGTAGTTAATGTCT 716991 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATA 37662 || || || || || || || || | || ||| || | | || || | || | Sbjct 716990 ATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCACATATGACAGTTTTTTAAAGTCA 716931 Query 37663 AA--TACGTT-ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 || | || | | | || | | | | | || || | |||||||| || || Sbjct 716930 AAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACCGCC 716871 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 || ||||| | | | | ||| | ||| ||||| ||||| || || || | || || Sbjct 716870 ACCTCATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTG 716811 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||| ||| || ||| || | || || | ||||| || || || ||||| || Sbjct 716810 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTA 716751 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGA-TCG 37897 || |||| | || | || ||||| | | ||| | || || || || || | ||| Sbjct 716750 CCCGTTTCTGTCTGGGATTCAATAATGGCATACCACAC-CTGCTGAGCCTTCACCACTCG 716692 Query 37898 CTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA 37957 ||| | | || | || |||| | || | | | ||| || | |||||| Sbjct 716691 CTTGACCCTCCC-CTCCTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCTCCCCCCAGC 716633 Query 37958 CATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTA 38017 ||| | || || || ||| |||||||| |||||||| |||| | | || | Sbjct 716632 ATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCA 716573 Query 38018 CGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATT 38077 | | | ||| || || ||||| | ||| | |||| ||| | |||| ||| || | | Sbjct 716572 CTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTTGCT 716513 Query 38078 CTTCGTTCCCTACATTCTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATGGT 38136 | || || || ||||| ||| |||| || || || || | ||| ||||||||| Sbjct 716512 CATCCTTACCCGTGTTCTT-CTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGC 716454 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || | || || | | ||||| ||||| || | || ||||| | | ||| | | Sbjct 716453 TCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCCGCCCTGGTCGACATAACGCGCC 716394 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 ||||| || || | ||| | ||| || || | ||||||||| ||||||||| | || | Sbjct 716393 GTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGCCAGCG 716334 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 || || | ||| | | || || || | || || || ||||| || || ||| Sbjct 716333 ATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACACCGATTCCTCCAGCCGATTTG 716274 Query 38317 GATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376 || || | || || || || | ||| ||| | || ||||| || ||||||||||| || Sbjct 716273 GAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATG 716214 Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436 | || | || || ||||||| || ||| ||||| ||||| || | ||||||| Sbjct 716213 GCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGTGTAGGA 716154 Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496 || || || ||||||| | || |||| | || || || || || | |||| ||| Sbjct 716153 GAAGCGTGGGTGAACCACCTCTCTGACAGAAGGTTGTAGGTCTCAATGGCTGCATCGATA 716094 Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 ||| ||| || || | ||| || ||||| ||||| || || || Sbjct 716093 TCAGTTTTGTGGATGCCGACAGACACTCTCATGAGCATGTGCTGCGG 716047 >seq65 Length=22759279 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| ||||| Sbjct 20259746 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTTTC 20259687 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || |||||||| ||||| ||||||||||| || || || || Sbjct 20259686 AGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGGCC 20259627 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 20259626 ACCACACGCTCTCC 20259613 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| ||||| Sbjct 20277586 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTTTC 20277645 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || |||||||| ||||| ||||||||||| || || || || Sbjct 20277646 AGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGGCC 20277705 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 20277706 ACCACACGCTCTCC 20277719 >seq142 Length=12874233 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || ||||| || ||||| || | || | |||||||||| |||| || || Sbjct 6159065 TCATCCCTGCTTATCAGCTCATTGGAGTAGGTAAGCCCGGGCATCAGGCCTCTCTTCTTG 6159124 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||| | || ||||| ||||| ||||| ||||| ||||| |||||||||||||| || Sbjct 6159125 AGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAAAGCC 6159184 Query 11774 AC 11775 || Sbjct 6159185 AC 6159186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522551080960