Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq136 536 2e-147 seq119 96.9 5e-15 seq220 87.8 2e-12 >seq136 Length=1264375 Score = 536 bits (594), Expect = 2e-147 Identities = 1309/1973 (66%), Gaps = 19/1973 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||||||||||||| | || || | | ||||| ||||| || ||||| | | ||| Sbjct 717549 CTGAATGGATCCATTGTGAGCTATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCTCT 717490 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | | | || ||||| ||||| || | ||||| ||||| || | || || Sbjct 717489 CTCCGTCAGGTCCTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCGGAGAGGACCCT 717430 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || || || || | || | |||||| || || |||| || || || Sbjct 717429 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGC 717370 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || || || | |||| | ||| Sbjct 717369 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGAT 717310 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | || || || | || | | Sbjct 717309 CTTCTCCTTCAGCAGCTTCCAGTCGCACAGGTCAGTGGG--CGTCTTCTCCCACATGTCG 717252 Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 | || || | || || ||| | || ||| |||| || ||||| || || || Sbjct 717251 TACTGGAGGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGAGCTCG 717192 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 | || || || || || ||||| | || |||| || ||||| || ||||| | | Sbjct 717191 GCGGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGATG 717132 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || || || |||| ||||| || | | | || || || || || || Sbjct 717131 TTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGCC 717072 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 || || |||||||| || || || || | || | ||| || || | || ||||| Sbjct 717071 AAACCCTGAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTTCAACC 717012 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | ||||| || ||||| ||||| || || || || || |||| ||||||||| |||| Sbjct 717011 ACTGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCACA 716952 Query 65685 TCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACA 65741 | |||||| ||| ||||| |||||| | || ||||||| | || | Sbjct 716951 TATGACAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATG 716892 Query 65742 GATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGC 65799 || ||||||||||| || || ||||||| | || | |||| | || || |||| Sbjct 716891 GAGGCCAGATTACACACCGCCACCTCATCGTGGCTGGTG--TATTCAACAATTTCTGTGC 716834 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | || || || || |||||||| || | ||| || || || ||||| |||| || || | Sbjct 716833 AGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 716774 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 | || || || ||| | || ||||| ||||| |||| ||||| ||||| || | ||| | Sbjct 716773 CTTTGTACAGCATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACCACA 716714 Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 65979 | ||||||| | | ||| ||| || | || ||| || || | Sbjct 716713 CCTGCTGAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCATATTTGGTGTAGAGCT 716654 Query 65980 GTTCGAACTCGTCTCCCCAAACATT-GTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 | || ||||| || ||||| |||| ||||| || || || || | ||||||||||| Sbjct 716653 GCTCAAACTCCTCCCCCCAG-CATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGA 716595 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 ||||| ||| || || ||||| ||||| || | ||||| ||||| || || ||| Sbjct 716594 GACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGTGC-ATA 716536 Query 66099 AATAA-ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 || || |||||||| || || || || || || || ||||| || || || ||||| | Sbjct 716535 AAAAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTC 716476 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | | ||| | ||||| || |||| ||| ||||| | |||| || | ||||| || Sbjct 716475 AAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCC 716416 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 ||||| || | || | || ||||| || |||||||||| ||| || | | |||||| Sbjct 716415 GCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATT 716356 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAG 66337 || | || || || || | ||| ||||| || ||| | || || | | | Sbjct 716355 AGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCAC 716296 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||| ||||| || ||| ||| ||||| | || || | || | ||| ||||| ||||| Sbjct 716295 ACCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCC 716236 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 || || || |||||| ||||| ||| || || |||||||||| || | | | || Sbjct 716235 TTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGT 716176 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 ||| || || || | |||||||||||||| || ||||| | || || || || ||||| Sbjct 716175 TCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGACAGAAGGTTGTA 716116 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 |||||||| |||| || ||||| || || || || || | || | ||| | ||| Sbjct 716115 GGTCTCAATGGCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGAGCAT 716056 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 |||||| || | ||| | | ||| | | || ||||||| ||| || |||| ||| Sbjct 716055 GTGCTGCGGACGCTCAGCCACTTTGCCGGTGATCTTCAACAGGTACGACCGCTCCAGAGT 715996 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 || || ||||| ||||||| || || |||| |||||||| || |||||||||| Sbjct 715995 CTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGCCGAGTTGAGGCG 715936 Query 66698 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCC 66756 || || | | ||| | || | ||| | ||| || || || || || ||||| Sbjct 715935 GTCTTTGTTCTCAAGAACAATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGTTTTT 715877 Query 66757 CATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 66816 ||| ||| |||| |||||| | | ||||||||||| ||||| || | ||| || | Sbjct 715876 TATTCAGAGGGTTGATGTAGTTGTACAGGTCCTCCATCACCTCACTGAACACTTTCTTCG 715817 Query 66817 TTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTT 66876 | |||||||| || || || || || || | || || | ||||| || || || |||| Sbjct 715816 TCTCTTTGTGCAGGTTGGAAACAGCGATCCGTGCAGCGAGGATGGCGTAGTCGGGGTGTT 715757 Query 66877 GTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 66936 || || |||||| || || || |||||||| ||||| | || || || || |||| Sbjct 715756 TGGTTGTGAGAGTGGCGGCGATCTCAGCTGCCAGCGTGTCGAGCTCCACGGTGGTGACTC 715697 Query 66937 CATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGT 66996 | | || | || || || |||||||| | |||| || || | | |||| || Sbjct 715696 CGCTGTACAAACCCTGAATCACCTTCATGGTGATTTGGGCCGGGTCCACAAAGTCAGAGT 715637 Query 66997 TTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 67048 | | ||||| || || |||| || ||||| ||||||||||| |||||||| Sbjct 715636 TCAGTCCATAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 715585 >seq119 Length=8001379 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | ||||| || || || || ||||| || || || |||| ||| Sbjct 7002315 GTGCCAGCATTGAACAGTGTAGGTGAGGCATGGGTGAACCACTTCTCTGACAGTAAGTTG 7002256 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||||||| |||| || || || | || |||||| || || || || | ||||||| Sbjct 7002255 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACAGCCACTCTCATTAAC 7002196 Query 66576 ATGTGCTGAGGTCTTTCA 66593 |||||||| ||||| ||| Sbjct 7002195 ATGTGCTGGGGTCTCTCA 7002178 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 |||||| ||||| |||||||| | |||||||| || ||||| || || || ||||| | Sbjct 7003604 TATCTCTGTGCATAGATTACTGGATTTGATGGTGCCCAAATTCTGCTGGTTGCTCTTCCT 7003545 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 || || || ||||| || || ||| |||| ||||||||||| |||| || || || || Sbjct 7003544 ATTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTCTGTCTGTGACTCGATGAT 7003485 Query 65909 CGCTTTCCAGAC 65920 || | ||| || Sbjct 7003484 GGCATACCACAC 7003473 >seq220 Length=19050403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9264 TGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCA 9323 |||| |||||| |||| ||| |||| ||||| ||||| ||||| | | | || || Sbjct 14931875 TGCAGGAACAGGTTGACGATGTCCAGGTAGAGGTTGATGGAGGCCAGGATGTGCTCCTCG 14931816 Query 9324 GGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGG 9383 || ||||||| | || || ||| ||||| ||||| ||||| |||||||| | || Sbjct 14931815 GGGGAGAGCTGCTTCATCAGCATGTGGGTGTCGTAGATGATGAAGCCGCAGAAGATCAGA 14931756 Query 9384 GCCCCAAAAGCAGACAGGACCAGCTC 9409 ||||| |||||||||||||||| Sbjct 14931755 GCCCCGGCTCCAGACAGGACCAGCTC 14931730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169640770560