Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq136 547 1e-150 seq65 114 2e-20 seq119 100 4e-16 seq142 96.9 5e-15 >seq136 Length=1264375 Score = 547 bits (606), Expect = 1e-150 Identities = 1312/1971 (67%), Gaps = 15/1971 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||||||||||||| | || || | | ||||| ||||| || ||||| | | ||| Sbjct 717549 CTGAATGGATCCATTGTGAGCTATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCTCT 717490 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | | | || ||||| ||||| || | ||||| ||||| || | || || Sbjct 717489 CTCCGTCAGGTCCTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCGGAGAGGACCCT 717430 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || || || || | || | || || || || |||| || || || Sbjct 717429 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGC 717370 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || || || ||||| || |||| || | || || || | |||| ||| Sbjct 717369 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGAT 717310 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || || || |||| | || || || |||| || | | | | ||| | || Sbjct 717309 CTTCTCCTTCAGCAGCTTCC-AGTCGCACAGGTCAGTGGGCGTCTTC-TCCCACATGTCG 717252 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || || | || || || | || ||| || || || || || || || Sbjct 717251 TACTGGAGGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGAGCTCG 717192 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 |||| | || || || ||||| | || |||| || ||||| || || || | | Sbjct 717191 GCGGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGATG 717132 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 ||||| || || || |||| ||||| || | | | || || || || || || Sbjct 717131 TTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGCC 717072 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 || || |||||||| || || || || | || | ||| || || | || ||||| Sbjct 717071 AAACCCTGAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTTCAACC 717012 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | ||||| || ||||| ||||| || || || || ||| |||| ||||||||| |||| Sbjct 717011 ACTGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCACA 716952 Query 79564 TCCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGCGACA 79620 | ||||| ||| ||||| || || | || ||||||| | |||| Sbjct 716951 TATGACAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATG 716892 Query 79621 GATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATTTCAGTGC 79678 || ||||||||||| || || ||||||| | || | |||| | ||||| |||| Sbjct 716891 GAGGCCAGATTACACACCGCCACCTCATCGTGGCTGGTG--TATTCAACAATTTCTGTGC 716834 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 ||||||| || || || ||||| || | ||| || || || ||||| |||| || || | Sbjct 716833 AGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 716774 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 79798 | || || || ||| |||| ||||| ||||| |||| ||||| ||||| || | ||| | Sbjct 716773 CTTTGTACAGCATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACCACA 716714 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 79858 | ||||||| | | |||| ||| || | || |||| || || | Sbjct 716713 CCTGCTGAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCATATTTGGTGTAGAGCT 716654 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 | || ||||| || ||||| ||||| | || || || |||| |||||||||| | Sbjct 716653 GCTCAAACTCCTCCCCCCAGCATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAG 716594 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 |||| ||| | || |||| ||||| || | ||||| ||||| || || || Sbjct 716593 ACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAAA 716534 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 | |||||||||| || ||||| || || || || ||||| || || || ||||| | | Sbjct 716533 AAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAA 716474 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | ||| | ||||| || |||| ||| ||||| | ||||||||| ||||| || | Sbjct 716473 ACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCCGC 716414 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | || | || ||||| || |||||||||| ||| || | | |||||| | Sbjct 716413 CCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATTAG 716354 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218 | | || || || || | ||| ||||| || | | | || || | | | || Sbjct 716353 AGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACAC 716294 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | ||||| || ||| ||| ||||| | || || | || | ||| ||||| ||||| | Sbjct 716293 CGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCCTT 716234 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338 | ||||| ||||| ||||| ||| || || |||||||||| || | | | |||| Sbjct 716233 CAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTC 716174 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | || || || | |||||||||||||| || ||||| | || ||||| || ||||| | Sbjct 716173 CTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGACAGAAGGTTGTAGG 716114 Query 80399 TCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 ||||||| |||| || ||||| || || || || || | || | ||| | ||||| Sbjct 716113 TCTCAATGGCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGAGCATGT 716054 Query 80459 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTT 80518 |||| || | ||| | | ||| | || ||||||| ||| || |||| ||| | Sbjct 716053 GCTGCGGACGCTCAGCCACTTTGCCGGTGATCTTCAACAGGTACGACCGCTCCAGAGTCT 715994 Query 80519 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 80578 | || ||||| ||||||| || || |||| |||||||| || |||||||||| | Sbjct 715993 TGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGCCGAGTTGAGGCGGT 715934 Query 80579 CCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCA 80637 | || | | ||| | || | ||| | ||| || || || || || ||||| | Sbjct 715933 CTTTGTTCTCAAGAACAATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGTTTTTTA 715875 Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 80697 || ||| || | |||||| | | ||||||||||| ||||| || | ||| || || Sbjct 715874 TTCAGAGGGTTGATGTAGTTGTACAGGTCCTCCATCACCTCACTGAACACTTTCTTCGTC 715815 Query 80698 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGT 80757 || ||||| || || || || || || | || || | ||||| || || || |||| Sbjct 715814 TCTTTGTGCAGGTTGGAAACAGCGATCCGTGCAGCGAGGATGGCGTAGTCGGGGTGTTTG 715755 Query 80758 GTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 80817 || || |||||| || || || |||||||| ||||| | || || || || ||||| Sbjct 715754 GTTGTGAGAGTGGCGGCGATCTCAGCTGCCAGCGTGTCGAGCTCCACGGTGGTGACTCCG 715695 Query 80818 TTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTT 80877 | || | || || || |||||||| | |||| || || | | |||| ||| Sbjct 715694 CTGTACAAACCCTGAATCACCTTCATGGTGATTTGGGCCGGGTCCACAAAGTCAGAGTTC 715635 Query 80878 AAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 80927 | ||||| || || |||| || ||||| ||||||||||| |||||||| Sbjct 715634 AGTCCATAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 715585 >seq65 Length=22759279 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||||| Sbjct 20259748 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20259689 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | || || || ||||| ||||||||||| || |||||||| |||| Sbjct 20259688 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20259629 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 20259628 CCACCACACGCTCTCC 20259613 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||||| Sbjct 20277584 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20277643 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | || || || ||||| ||||||||||| || |||||||| |||| Sbjct 20277644 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20277703 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 20277704 CCACCACACGCTCTCC 20277719 >seq119 Length=8001379 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||||| || || || || ||||| || || ||||||| ||| Sbjct 7002315 GTGCCAGCATTGAACAGTGTAGGTGAGGCATGGGTGAACCACTTCTCTGACAGTAAGTTG 7002256 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||||||| |||| || || || | || |||||| || || || || | ||||||| Sbjct 7002255 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACAGCCACTCTCATTAAC 7002196 Query 80455 ATGTGCTGAGGTCTTTCA 80472 |||||||| ||||| ||| Sbjct 7002195 ATGTGCTGGGGTCTCTCA 7002178 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||||||||| || || ||||| | ||| | || || ||||||| || ||| Sbjct 7003074 ACTCGTTTCATAAAGAGGTCCGGGATCCACATAGCGAAGAACAGGTCTCTGGCCCTCTGC 7003015 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || ||||| ||||| || | || | ||| | | | ||| |||||||||| Sbjct 7003014 TCCTCTTTACCTGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGGC 7002955 Query 80059 TCCA 80062 |||| Sbjct 7002954 TCCA 7002951 >seq142 Length=12874233 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || || || ||||| | || || |||||||| ||||| | ||| | Sbjct 6159063 CCTCATCCCTGCTTATCAGCTCATTGGAGTAGGTAAGCCCGGGCATCAGGCCTCTCTTCT 6159122 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||| | |||| || ||||| ||||| |||||||||||||| || || ||||| | Sbjct 6159123 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAAAG 6159182 Query 50102 CAACAA 50107 | |||| Sbjct 6159183 CCACAA 6159188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265352309760