Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq136 511 6e-140 seq65 96.9 5e-15 seq142 87.8 2e-12 seq119 84.2 3e-11 >seq136 Length=1264375 Score = 511 bits (566), Expect = 6e-140 Identities = 1302/1973 (66%), Gaps = 19/1973 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||||||||||||| | || || | | || || ||||| || ||||| | | ||| Sbjct 717549 CTGAATGGATCCATTGTGAGCTATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCTCT 717490 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | | | || ||||||||||| || | ||||| ||||| || | || || Sbjct 717489 CTCCGTCAGGTCCTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCGGAGAGGACCCT 717430 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || || || || | || | ||||| || || |||| || || || Sbjct 717429 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGC 717370 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG-- 71286 || || || || ||||| || |||| || || || || || | || ||| | || Sbjct 717369 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCC--GTGCTTGGCG 717312 Query 71287 ATTTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNN 71345 || || || || || || |||| | | || || || | || Sbjct 717311 ATCTTCTCCTTCAGCAGCTTCC-AGTCGCACAGGTCAGTGGGCGTCTTCTCCCACATGTC 717253 Query 71346 NNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTT 71405 |||| || || | || ||| |||| || ||||| || || | Sbjct 717252 GTACTGGAGGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGAGCTC 717193 Query 71406 TTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTT 71465 |||| || || || || ||||| | || | || || ||||| || || || | | Sbjct 717192 GGCGGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGAT 717133 Query 71466 ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 71525 ||||| || || || ||||| ||||| || | | | || || || || || || Sbjct 717132 GTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGC 717073 Query 71526 TAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585 || || ||||| || || || || || | ||| | ||| || || | || ||||| Sbjct 717072 CAAACCCTGAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTTCAAC 717013 Query 71586 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC 71645 | ||||| || ||||| ||||| || || || || || |||| ||||||||| ||| Sbjct 717012 CACTGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCAC 716953 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAAC 71702 || ||||| ||| ||||| ||| || | || ||| ||| | || | Sbjct 716952 ATATGACAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGAT 716893 Query 71703 AGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTG 71760 || ||||||||||| || || ||||||| | || || |||| | |||||| ||| Sbjct 716892 GGAGGCCAGATTACACACCGCCACCTCATCGTGGCT--GGTGTATTCAACAATTTCTGTG 716835 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || || || || || |||||||| || | ||| || || || ||||| |||| || || Sbjct 716834 CAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCG 716775 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 || || || || || |||| ||||| ||||| |||| ||||| ||||| || | ||| Sbjct 716774 TCTTTGTACAGCATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACCAC 716715 Query 71881 ACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAAT 71940 || ||||||| | | |||| ||| || | || |||| || || | Sbjct 716714 ACCTGCTGAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCATATTTGGTGTAGAGC 716655 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAA 71999 | || ||||| || ||||| ||||| ||| | || || || || ||||||||||||| Sbjct 716654 TGCTCAAACTCCTCCCCCCA-GCATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAG 716596 Query 72000 TGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 72059 ||||| ||| | | |||| ||||| || | ||||| ||||| || || Sbjct 716595 AGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATA 716536 Query 72060 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 72119 ||| |||||||||| || ||||| || || || || ||||| || || || ||||| | Sbjct 716535 AAAAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTC 716476 Query 72120 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCC 72179 | | ||| | ||||| || |||| ||| ||||| | ||||||| | ||||| || Sbjct 716475 AAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCC 716416 Query 72180 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 72239 ||||| || | || | || ||||| || |||||||||| ||| || | | |||||| Sbjct 716415 GCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATT 716356 Query 72240 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAG 72299 || || || || || | ||| ||||| || | | | || ||| | | | Sbjct 716355 AGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCAC 716296 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 ||| ||||| || ||| ||| ||||| | || || | || | ||| ||||| ||||| Sbjct 716295 ACCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCC 716236 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || || || |||||| ||||| ||| || || |||||||||| || | | | || Sbjct 716235 TTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGT 716176 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||| || || || | |||||||||||||| || ||||| | || ||||| || ||||| Sbjct 716175 TCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGACAGAAGGTTGTA 716116 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 |||||||| |||| || ||||| || || || || || | || | ||| | ||| Sbjct 716115 GGTCTCAATGGCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGAGCAT 716056 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||||| || | ||| | | ||| | || ||||||| ||| || |||| ||| Sbjct 716055 GTGCTGCGGACGCTCAGCCACTTTGCCGGTGATCTTCAACAGGTACGACCGCTCCAGAGT 715996 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || ||||| ||||||| || || |||| |||||||| || |||| ||||| Sbjct 715995 CTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGCCGAGTTGAGGCG 715936 Query 72660 ATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCC 72718 || || | | ||| || || | ||| | ||| || || || || || ||||| Sbjct 715935 GTCTTTGTTCTCAAGAACAATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGTTTTT 715877 Query 72719 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 72778 ||| ||| || | |||||| | | ||||||||||| ||||| || | ||| || | Sbjct 715876 TATTCAGAGGGTTGATGTAGTTGTACAGGTCCTCCATCACCTCACTGAACACTTTCTTCG 715817 Query 72779 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTT 72838 | || ||||| || || || || || || | || || || ||||| || || || |||| Sbjct 715816 TCTCTTTGTGCAGGTTGGAAACAGCGATCCGTGCAGCGAGGATGGCGTAGTCGGGGTGTT 715757 Query 72839 GTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 72898 || || |||||| || || || |||||||| ||||| | || || || || |||| Sbjct 715756 TGGTTGTGAGAGTGGCGGCGATCTCAGCTGCCAGCGTGTCGAGCTCCACGGTGGTGACTC 715697 Query 72899 CATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGT 72958 | | || | || || || |||||||| | |||| || || | | |||| || Sbjct 715696 CGCTGTACAAACCCTGAATCACCTTCATGGTGATTTGGGCCGGGTCCACAAAGTCAGAGT 715637 Query 72959 TTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 | | ||||| || || |||| || ||||| ||||||||||| ||||| || Sbjct 715636 TCAGTCCATAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 715585 >seq65 Length=22759279 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||||| Sbjct 20259748 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20259689 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || ||||| || |||| Sbjct 20259688 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20259629 Query 42207 C 42207 | Sbjct 20259628 C 20259628 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||||| Sbjct 20277584 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20277643 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || ||||| || |||| Sbjct 20277644 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20277703 Query 42207 C 42207 | Sbjct 20277704 C 20277704 >seq142 Length=12874233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || || || | || ||||| | || || |||||||| ||||| | ||| | Sbjct 6159063 CCTCATCCCTGCTTATCAGCTCATTGGAGTAGGTAAGCCCGGGCATCAGGCCTCTCTTCT 6159122 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||| | || | || ||||| ||||| |||||||||||||| || || ||||| | Sbjct 6159123 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAAAG 6159182 Query 42207 C 42207 | Sbjct 6159183 C 6159183 >seq119 Length=8001379 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||||||||| || || ||||| | ||| | || || ||||||| || ||| Sbjct 7003074 ACTCGTTTCATAAAGAGGTCCGGGATCCACATAGCGAAGAACAGGTCTCTGGCCCTCTGC 7003015 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || ||||| ||||| || | || | ||| | | | ||| |||||||||| Sbjct 7003014 TCCTCTTTACCTGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGGC 7002955 Query 72142 TCCA 72145 |||| Sbjct 7002954 TCCA 7002951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135978531840