Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq201 141 1e-28 seq199 141 1e-28 >seq201 Length=2273880 Score = 141 bits (156), Expect = 1e-28 Identities = 201/282 (71%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 8662 CTCCTTATTG---GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGAC 8718 ||||| |||| ||||| |||| | | ||||||||| ||| |||| ||| || Sbjct 1863859 CTCCTCATTGCGTGGAACATGGAAGTCCACGTACGGACACCACTTGGTGTTGAGACACAC 1863800 Query 8719 TAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCT 8778 || || | ||| | | | |||||||| || || ||||| ||||||||||| Sbjct 1863799 CAGTTTCTTCAAAGTGGAAGTTTTGACGATATTGAAGCCTGTCTCTCCCCCGAAGGTGCT 1863740 Query 8779 GGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGG 8838 ||| ||||| || | |||||||||||| ||| ||| |||||||| ||||| || || Sbjct 1863739 GGGCTTCCAATACTCAGGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGG 1863680 Query 8839 AGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8898 ||| |||| ||| | || |||||||| || || | || ||||| | || |||| || Sbjct 1863679 AGCACCCATCTCAACCATACTCTCACCAAATATACCATTCGGACGTGCTTTCTCCAGCAT 1863620 Query 8899 GAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || ||| | ||| ||||||| ||| || ||||| ||||| || Sbjct 1863619 GACTCCAGGGTAAAACTCCAAAGCATCAATGTCCCCGTAGAG 1863578 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || ||||||||||| | |||||||| || || || || ||| ||| |||||| Sbjct 1860263 TCACCAATAATGATGAGCCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGT 1860204 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || || || ||||| || ||||||||||| ||||| ||||| | || |||||||| Sbjct 1860203 TCAGCCTTAAGGACATCACAGACTCTGTTGTGCTCCCTCAGCCATACGGTGGCGTACATG 1860144 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACC 9764 ||||||| |||| | |||||| ||| ||||| Sbjct 1860143 GTGAGACCCGGCAGGATGCCAAATAACTCCTGACC 1860109 >seq199 Length=11596915 Score = 141 bits (156), Expect = 1e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 ||| | |||| ||| |||| || ||| || |||||||||||||| |||||||| || Sbjct 7992671 GCAGTGTTGATGATGTCAAAGCCTGCGTTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 7992730 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 |||||||||||| ||| |||| | ||| |||||||| || || || |||| ||| | Sbjct 7992731 GGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGAAAGGGGCTCCCATCTCCACC 7992790 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| |||| || |||||||| || | | ||| |||||||||| | || | ||| | | Sbjct 7992791 ATGGTCTCCCCAAAGATGGCATTAGCCCTGGGTTTTTCCACCAGCAGGCCTGGGTAGAGC 7992850 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 |||||||| |||| | |||||| | || || || || ||||| || |||||| Sbjct 7992851 TCCACAGCGTCGACATGTCCGTACATCTCCTCCAGCAGTGCGGCCATTTCTTTCTCTCCT 7992910 Query 8975 G 8975 | Sbjct 7992911 G 7992911 Score = 131 bits (144), Expect = 2e-25 Identities = 182/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || || | |||||| || |||||||| || ||| ||||||| ||| || || ||| | Sbjct 7994513 CCAATCAGGATGAGCCGTGTGGTCTGGAAGAGTCTTTCGTCATCCCAGTCGGGGTGTACC 7994572 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 |||| ||||| ||||| | ||||||||||| ||||| || || ||||||||||| Sbjct 7994573 TCCTTCAACACATCACACACCCGGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATC 7994632 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 |||||||| |||||||| || ||||| || || ||||| | || | ||||| || Sbjct 7994633 AGACCAGGGACCAGGCCGAATGCCTCGTGGCCCACAGCGAAGCGGTGAGAGTCGGGGACA 7994692 Query 9793 TCGGGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCAC 9850 | || || ||| ||||| ||||| || || || || | ||||| ||||| || | Sbjct 7994693 TGAGGGGGGTAGTGCATGTCGACACCT--ACTTCCTTTACTGTTGGGGGGTACATCTCTC 7994750 Query 9851 CGTCAATAATCTG 9863 | || | ||||| Sbjct 7994751 CATCCAGGATCTG 7994763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708521399080960