Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq136 520 1e-142 seq65 114 2e-20 seq142 102 1e-16 seq119 96.9 4e-15 >seq136 Length=1264375 Score = 520 bits (576), Expect = 1e-142 Identities = 1303/1972 (66%), Gaps = 17/1972 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||||||||||||| | || || | | ||||| ||||| || ||||| | | ||| Sbjct 717549 CTGAATGGATCCATTGTGAGCTATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCTCT 717490 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | | | || ||||| ||||| || | ||||| ||||| || | || || Sbjct 717489 CTCCGTCAGGTCCTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCGGAGAGGACCCT 717430 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || || || || | || | ||||| || || |||| || || || Sbjct 717429 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGC 717370 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || || || | |||| | ||| Sbjct 717369 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGAT 717310 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | || || || | || | | Sbjct 717309 CTTCTCCTTCAGCAGCTTCCAGTCGCACAGGTCAGTGGG--CGTCTTCTCCCACATGTCG 717252 Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 | || || | || || ||| | || ||| |||| || ||||| || || || Sbjct 717251 TACTGGAGGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGAGCTCG 717192 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 | || || || || || ||||| | || |||| || ||||| || ||||| | | Sbjct 717191 GCGGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGATG 717132 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || || || |||| ||||| || | | | || || || || || || Sbjct 717131 TTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGCC 717072 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 || || |||||||| || || || || | || | ||| || || | || ||||| Sbjct 717071 AAACCCTGAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTTCAACC 717012 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | ||||| || ||||| ||||| || || || || || |||| ||||||||| |||| Sbjct 717011 ACTGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCACA 716952 Query 62841 TCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAAGGCAACA 62897 | |||||| ||| ||||| ||| || | || ||||||| | || | Sbjct 716951 TATGACAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATG 716892 Query 62898 GATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGC 62955 || ||||||||||| || || ||||||| | || | |||| | || || |||| Sbjct 716891 GAGGCCAGATTACACACCGCCACCTCATCGTGGCTGGTG--TATTCAACAATTTCTGTGC 716834 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | || || || || ||||| || || | ||| || || || ||||| |||| || || | Sbjct 716833 AGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 716774 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 | || || || ||| | || ||||| ||||| |||| ||||| ||||| || | ||| | Sbjct 716773 CTTTGTACAGCATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACCACA 716714 Query 63076 CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATC 63135 | ||||||| | | ||| |||| || | || ||| || || | Sbjct 716713 CCTGCTGAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCATATTTGGTGTAGAGCT 716654 Query 63136 GTTCGAACTCGTCTCCCCAAACATT-GTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 | || ||||| || ||||| |||| ||||| || || || || | ||||||||||| Sbjct 716653 GCTCAAACTCCTCCCCCCAG-CATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGA 716595 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 ||||| ||| || || ||||| ||||| || | ||||| ||||| || || | Sbjct 716594 GACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAA 716535 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 || |||||||||| || || || || || || || ||||| || || || ||||| | Sbjct 716534 AAAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCA 716475 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | ||| | ||||| || |||| ||| ||||| | |||| || | ||||| || Sbjct 716474 AACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCCG 716415 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 ||||| || | || | || ||||| || |||||||||| ||| || | | ||| || Sbjct 716414 CCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATTA 716355 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63494 || | || || || || | ||| ||||| || | | | || || | | | | Sbjct 716354 GAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACA 716295 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || ||||| || ||| ||| ||||| | || || | || | ||||||||| || || Sbjct 716294 CCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCCT 716235 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || ||||| ||||| ||||| ||| || || |||||||||| || | | | ||| Sbjct 716234 TCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTT 716175 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || || || || | |||||||||||||| || ||||| | || || || || ||||| Sbjct 716174 CCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGACAGAAGGTTGTAG 716115 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 |||||||| |||| || ||||| || || || || || | || | ||| | |||| Sbjct 716114 GTCTCAATGGCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGAGCATG 716055 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 ||||| || | ||| | | ||| | | || ||||||| ||| || |||| ||| Sbjct 716054 TGCTGCGGACGCTCAGCCACTTTGCCGGTGATCTTCAACAGGTACGACCGCTCCAGAGTC 715995 Query 63795 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63854 || || ||||| ||||||| || || |||| |||||||| || |||||||||| Sbjct 715994 TTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGCCGAGTTGAGGCGG 715935 Query 63855 TCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCC 63913 || || | | ||| || || | ||| | ||| || || || || || ||||| Sbjct 715934 TCTTTGTTCTCAAGAACAATGTCGAGGGT-CTCCTTGGAGATCATGGGGGAGTGTTTTTT 715876 Query 63914 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 63973 ||| ||| || | |||||| | | ||||||||||| ||||| || | ||| || || Sbjct 715875 ATTCAGAGGGTTGATGTAGTTGTACAGGTCCTCCATCACCTCACTGAACACTTTCTTCGT 715816 Query 63974 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTG 64033 || ||||| || || || || || || | || || || ||||| || || || |||| Sbjct 715815 CTCTTTGTGCAGGTTGGAAACAGCGATCCGTGCAGCGAGGATGGCGTAGTCGGGGTGTTT 715756 Query 64034 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64093 || || |||||| || || || |||||||| ||||| | || || || || ||||| Sbjct 715755 GGTTGTGAGAGTGGCGGCGATCTCAGCTGCCAGCGTGTCGAGCTCCACGGTGGTGACTCC 715696 Query 64094 ATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTT 64153 | || | || ||||| |||||||| | |||| || || | | || | ||| Sbjct 715695 GCTGTACAAACCCTGAATCACCTTCATGGTGATTTGGGCCGGGTCCACAAAGTCAGAGTT 715636 Query 64154 TAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64204 | ||||| || || |||| || ||||| ||||||||||| |||||||| Sbjct 715635 CAGTCCATAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 715585 >seq65 Length=22759279 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||||| Sbjct 20259748 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20259689 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | |||||| || ||||| ||||||||||| || ||||| || |||| Sbjct 20259688 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20259629 Query 33446 C 33446 | Sbjct 20259628 C 20259628 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||||| Sbjct 20277584 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20277643 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | |||||| || ||||| ||||||||||| || ||||| || |||| Sbjct 20277644 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20277703 Query 33446 C 33446 | Sbjct 20277704 C 20277704 >seq142 Length=12874233 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || || || || || ||||| | || || |||||||| ||||| | ||| | Sbjct 6159063 CCTCATCCCTGCTTATCAGCTCATTGGAGTAGGTAAGCCCGGGCATCAGGCCTCTCTTCT 6159122 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||| | |||| ||||||||| ||||| |||||||||||||| || || ||||| | Sbjct 6159123 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAAAG 6159182 Query 33446 C 33446 | Sbjct 6159183 C 6159183 >seq119 Length=8001379 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | ||||| || || || || ||||| || || || |||| ||| Sbjct 7002315 GTGCCAGCATTGAACAGTGTAGGTGAGGCATGGGTGAACCACTTCTCTGACAGTAAGTTG 7002256 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||||||| |||| || || || | || |||||| || || || || | ||||||| Sbjct 7002255 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACAGCCACTCTCATTAAC 7002196 Query 63732 ATGTGCTGAGGTCTTTCA 63749 |||||||| ||||| ||| Sbjct 7002195 ATGTGCTGGGGTCTCTCA 7002178 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 62945 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 |||||| ||||| |||||||| | ||||| || || ||||| || || || ||||| | Sbjct 7003604 TATCTCTGTGCATAGATTACTGGATTTGATGGTGCCCAAATTCTGCTGGTTGCTCTTCCT 7003545 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 || || || ||||| || || ||| |||| ||||||||||| |||| || || || || Sbjct 7003544 ATTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTCTGTCTGTGACTCGATGAT 7003485 Query 63065 CGCTTTCCAGAC 63076 || | ||| || Sbjct 7003484 GGCATACCACAC 7003473 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||||||||||||||| || || ||||| | ||| | || || ||||||| || || Sbjct 7003075 CACTCGTTTCATAAAGAGGTCCGGGATCCACATAGCGAAGAACAGGTCTCTGGCCCTCTG 7003016 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| || ||||| ||||| || | || | ||| | | | ||| |||||||||| Sbjct 7003015 CTCCTCTTTACCTGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGG 7002956 Query 63335 TTCCA 63339 |||| Sbjct 7002955 CTCCA 7002951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944209853440