Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq48 131 1e-25 seq106 123 2e-23 seq81 102 5e-17 >seq48 Length=236306 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 155333 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 155274 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 155273 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 155239 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 166187 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 166128 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 166127 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 166093 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 177042 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 176983 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 176982 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 176948 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 187880 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 187821 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 187820 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 187786 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 163697 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 163638 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 163637 GCCGGTATTTAGCCTTA 163621 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 174551 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 174492 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 174491 GCCGGTATTTAGCCTTA 174475 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 185389 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 185330 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 185329 GCCGGTATTTAGCCTTA 185313 >seq106 Length=24502646 Score = 123 bits (136), Expect = 2e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 |||| ||||||| || | ||| || || ||||| ||||||||||| ||||||||| || Sbjct 22580251 CCACAGACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCA 22580192 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 ||||||| || | |||||| |||||||| || | | |||| |||||||| | |||| Sbjct 22580191 AAAACGACCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTG 22580132 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || | || |||||||||||| || || || ||||| || || || || Sbjct 22580131 ATGGGTTCATCAGAAAATTTGTGCTGTGTACCGAGTGTGACAACCCTGAAACTGATCT 22580074 >seq81 Length=8687835 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| || | ||| || ||| |||||| || || ||||| |||| Sbjct 2926648 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 2926589 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || |||||||| || || | || ||||| | || Sbjct 2926588 ACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGG 2926529 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || |||||| |||| | || || | ||||| Sbjct 2926528 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAA 2926469 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || ||||| || | ||| || || ||||||||||| Sbjct 2926468 CCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAATATCTGCAT 2926420 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| || | ||| || || || || || || ||||| |||| Sbjct 2925964 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAG 2925905 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || |||||||| || || | || ||||| | || Sbjct 2925904 ACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGG 2925845 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| |||||| ||| ||||||| | ||||| | |||| Sbjct 2925844 GAATGCCTTCCTTATCCTGGATTTTTGCCTTGACATTCTCAATGGTATCGCTGGGCTCAA 2925785 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || || || || || || | ||| ||||| || ||||||||||| Sbjct 2925784 CCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2925733 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| || | ||| || ||| |||||| || || ||||| |||| Sbjct 2927104 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 2927045 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || |||||||| || || | || ||||| | || Sbjct 2927044 ACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGG 2926985 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || |||||| |||| | || || | |||| Sbjct 2926984 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAA 2926925 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || ||||| || | ||| || ||||| || ||||| Sbjct 2926924 CCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2926876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945632447104