Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq81 113 4e-20 seq166 95.1 1e-14 >seq81 Length=8687835 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| ||||||| | || || ||| | Sbjct 2939497 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGC 2939556 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| || ||||| Sbjct 2939557 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2939616 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| || || |||||| Sbjct 2939617 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAT 2939676 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || ||| | || || Sbjct 2939677 ATCCAGAAAGAATCTACCCTCCATCTTGTCCT 2939708 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| ||||||| | || || ||| | Sbjct 2927104 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGC 2927163 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| || ||||| Sbjct 2927164 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2927223 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | || |||||| Sbjct 2927224 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAT 2927283 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||| | || || | || || ||||| Sbjct 2927284 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGAGG 2927330 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || ||||| ||||||| | || || || | Sbjct 2926420 ATGCAGATATTTGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAACCCAGC 2926479 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| || || || Sbjct 2926480 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2926539 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| || || ||||| Sbjct 2926540 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 2926599 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | || || | || ||||| || Sbjct 2926600 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2926646 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| ||||||| | || || ||| | Sbjct 2926648 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGC 2926707 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| || ||||| Sbjct 2926708 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2926767 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | || ||||| Sbjct 2926768 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 2926827 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||| | || || | || ||||| || Sbjct 2926828 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGCGG 2926874 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| ||||||| | || || ||| | Sbjct 2926876 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGC 2926935 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| || || || Sbjct 2926936 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2926995 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| || || ||||| Sbjct 2926996 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 2927055 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | || || | || ||||| || Sbjct 2927056 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2927102 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | Sbjct 2925736 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 2925795 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| ||||||| || || ||||| ||||| || || || Sbjct 2925796 GATACCATTGAGAATGTCAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCAGATCAG 2925855 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| || || ||||| Sbjct 2925856 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 2925915 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||| | || || | || ||||| || Sbjct 2925916 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2925962 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || ||||| ||||||| | || || ||| | | Sbjct 2926192 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGT 2926251 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 2926252 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2926311 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | || ||||| Sbjct 2926312 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 2926371 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||| | || || | || ||||| || Sbjct 2926372 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGCGG 2926418 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| | | Sbjct 2939041 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 2939100 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 2939101 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2939160 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | || ||||| Sbjct 2939161 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAAC 2939220 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||| | || || | || ||||| || Sbjct 2939221 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2939267 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| ||||||| | || || || | Sbjct 2939269 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAACCCAGC 2939328 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 2939329 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2939388 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| || || ||||| Sbjct 2939389 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 2939448 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || ||| | || || | || ||||| || Sbjct 2939449 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGCGG 2939495 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || ||||| ||||||| | || || || | Sbjct 2927332 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAACCCAGC 2927391 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 2927392 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2927451 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| || || ||||| Sbjct 2927452 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 2927511 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || ||| | || || Sbjct 2927512 ATCCAGAAAGAATCTACCCTCCATCTTGTCCT 2927543 >seq166 Length=972737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| | Sbjct 969225 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 969284 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||||||||| || || || ||||| Sbjct 969285 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCAGACCAG 969344 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | ||||||| ||||| | ||| ||||| Sbjct 969345 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 969404 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | ||||| | || || ||||| Sbjct 969405 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGG 969451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325972024960