Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq136 414 2e-110 seq65 109 1e-18 seq119 104 4e-17 seq142 91.5 3e-13 >seq136 Length=1264375 Score = 414 bits (458), Expect = 2e-110 Identities = 960/1437 (67%), Gaps = 44/1437 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| | || |||||| | ||| | ||||||||||| || | |||| Sbjct 717542 GATCCATTGTGAGCTATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCT---CTCTCC 717486 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||| || || || | |||||||||||| || || || | ||| Sbjct 717485 GTCAGGTCCTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGG 717426 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| |||||| || | ||| || ||| |||||||||| ||||| || ||| Sbjct 717425 GTGTAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGCGGTG 717366 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| |||||||||||||||||| | ||| Sbjct 717365 GAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTC 717306 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| |||||||| |||| | | || || | || | |||||||| Sbjct 717305 TCCTTCAGCAGCTTCCAGTCGCACAGGTC--AGTGGGCGTCTTCT-------CCCACATG 717255 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || ||||||||||| || ||| || || ||| |||||| ||| | Sbjct 717254 TCGTACTGGAGGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGA-G 717196 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | | | |||||||| ||||| | || ||||||||||||||||||||||| ||||| Sbjct 717195 CTCGGCGGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTG 717136 Query 244426 CTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGT 244484 |||| | | || | |||| | || |||||| | ||||| |||||| | | Sbjct 717135 GATGTTGA-GCAGCTGAGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCAT 717077 Query 244485 CGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTT 244544 | |||| ||||| || ||||| || || || | ||| ||||||||||| | | ||||| Sbjct 717076 CAGCCAAACCCTGAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTT 717017 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGA 244604 | ||| || || |||| ||| || | |||||| |||| || || || Sbjct 717016 CAACCACTGGATAGTAGTTAATGTCTATGATCTTGTTCAGGT---------TCTTGACGA 716966 Query 244605 CGACGTCGGCCAGCAGCTGAAAGTCGT----ACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | || || || ||| ||| | | || ||| || || || | Sbjct 716965 TTACTTTGGTCA-CATATGACAGTTTTTTAAAGTCAAAGG-----TCCGCTCAGGGG--- 716915 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 | || || |||||| |||| | |||||| || || || |||||||| || | || Sbjct 716914 -TGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACCGCCACCTCATCGTGGCTG 716856 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||| | ||||| || ||||||||||| ||||| |||||||||||||| | ||| || Sbjct 716855 GTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGG 716796 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||||||||| ||||| |||||| | || || || || |||| Sbjct 716795 TTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTTTCTGTCTGG 716736 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC-GTCCTGCGAGCCTTGCCCTC 244899 | | | | | | ||| | | | |||||| ||| || || || | ||||| Sbjct 716735 GATTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACTCGCTTGA-CCCTCCCCTC 716677 Query 244900 TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG 244959 ||| || |||||| || ||| ||||| |||||| ||||| || ||||| Sbjct 716676 CTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCTCCCCCCAGCATTCGTCCAGCCCGGG 716617 Query 244960 GCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAG 245019 |||| ||| ||||| ||| ||| || | | || || |||| |||||| | Sbjct 716616 GCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAA 716557 Query 245020 GTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTT 245079 ||| |||||||| || || | || || || |||| ||| ||||| ||| || ||||| Sbjct 716556 GTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTGTT 716497 Query 245080 CTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAG 245139 |||| ||||||||| |||||||| ||||| | |||||| ||||||| ||| | |||| Sbjct 716496 CTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAA 716437 Query 245140 GGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCG 245199 ||| || || | ||||||||| |||||||| || | | | |||| | | | Sbjct 716436 GGCTCCCGGTCTCTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCT 716377 Query 245200 CAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCC 245259 ||| | || || | || ||||||| |||||| ||||| ||||||| ||| | Sbjct 716376 CAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGA 716317 Query 245260 CCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 |||| | ||||| | || || | ||| || || |||||||||||||| || Sbjct 716316 TCTGATGCAGCTGACCGCCACACCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATG 716257 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGA 245379 ||| | ||||| ||||| || |||||||| ||||||| ||||| |||||| Sbjct 716256 CTTCAGCGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCT 716197 Query 245380 GGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 |||||||| ||| || | | | | |||||| || || || |||||||| || Sbjct 716196 AGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAA 716140 >seq65 Length=22759279 Score = 109 bits (120), Expect = 1e-18 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| |||| || ||||| ||||||||||| || | ||||| | ||||||| Sbjct 20259623 TGGTGGCCTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCT 20259682 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| || ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 20259683 GGCTGAAAAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 20259741 Query 42825 GACGAGG 42831 ||||||| Sbjct 20259742 GACGAGG 20259748 Score = 109 bits (120), Expect = 1e-18 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| |||| || ||||| ||||||||||| || | ||||| | ||||||| Sbjct 20277709 TGGTGGCCTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCT 20277650 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| || ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 20277649 GGCTGAAAAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 20277591 Query 42825 GACGAGG 42831 ||||||| Sbjct 20277590 GACGAGG 20277584 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 20261763 CCCCTTCGACTTTATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 20261822 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 20261823 AGTGGGCGAGTACCAG 20261838 Score = 87.8 bits (96), Expect = 3e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGA-CCAACTT-TTTCGAGAAGC 43128 |||||||||||||||||||||||||| ||||||| |||| ||||||| ||| ||||||| Sbjct 20274573 CCCTTCGACTTTATGGAGAACATCTCCCTGGAGGGAAAGACCCAACTTCTTTTGAGAAGC 20274514 Query 43129 GCGTCGCCGACTACCAG 43145 | || | ||| |||||| Sbjct 20274513 GAGTGGGCGAGTACCAG 20274497 >seq119 Length=8001379 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| ||| ||| || || ||| ||| Sbjct 7004637 ACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTACTGGTGTACGCCTCAATG 7004578 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 7004577 GATTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 7004518 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 7004517 CTGTTCCTCACACCATGCCT 7004498 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| || ||||| ||||| || |||||| | |||||||| Sbjct 7003631 CACCTCGTCTTTGCTTGTGTACTCCACTATCTCTGTGCATAGATTACTGGATTTGATGGT 7003572 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||| | ||| || ||| ||| |||||||||||||||||||||||| Sbjct 7003571 GCCCAAATTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCCTTGTAGAGCATG 7003520 >seq142 Length=12874233 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || | || || ||| | || || || || ||||||||||| ||| | ||||| Sbjct 6159198 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGAATCTTCTTCTCTGGCTCATTCGCT 6159139 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| ||||||||| ||| ||| | ||||||||| || |||| ||| || || || Sbjct 6159138 GCCATCTATTGGCTCAAGAAGAGAGGCCT-GATGCCCGGGCTTACCTACTCCAATGAGCT 6159080 Query 42815 CATCAGCAGGGACGAGG 42831 || |||||||| |||| Sbjct 6159079 GATAAGCAGGGATGAGG 6159063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334667171840