Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq48 93.3 3e-14 seq81 89.7 4e-13 seq152 84.2 2e-11 seq166 82.4 6e-11 >seq48 Length=236306 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 160241 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGGAAC 160182 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 160181 CATAACTGATTTAATGAGCCATTCG 160157 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 160241 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGGAAC 160182 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 160181 CATAACTGATTTAATGAGCCATTCG 160157 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 171094 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGGAAC 171035 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 171034 CATAACTGATTTAATGAGCCATTCG 171010 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 171094 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGGAAC 171035 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 171034 CATAACTGATTTAATGAGCCATTCG 171010 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 181932 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGGAAC 181873 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 181872 CATAACTGATTTAATGAGCCATTCG 181848 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 181932 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGGAAC 181873 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 181872 CATAACTGATTTAATGAGCCATTCG 181848 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 192784 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGGAAC 192725 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 192724 CATAACTGATTTAATGAGCCATTCG 192700 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| |||| |||| ||||||| Sbjct 192784 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGGAAC 192725 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 192724 CATAACTGATTTAATGAGCCATTCG 192700 >seq81 Length=8687835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| ||||| || ||||| || ||| ||||||||| |||||||| || | Sbjct 2926647 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2926588 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| |||||||||||||| ||||| | ||||||||| Sbjct 2926587 CAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATC 2926534 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| ||||| || ||||| || ||| ||||||||| |||||||| || | Sbjct 2927103 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2927044 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| |||||||||||||| ||||| | ||||||||| Sbjct 2927043 CAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATC 2926990 >seq152 Length=5132711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCACGTTATCCAAGTAAC-TGAGTAAGATCTAAGGAACC 114391 |||||||| || |||||||| ||| |||||||||||||| |||| |||| |||||||| Sbjct 1985709 CATGTATTAGCCCTAGAATTGCCA-GTTATCCAAGTAACATGAGAGCGATCAAAGGAACC 1985767 Query 114392 AAAACTGATATATTGAGCCATTCGT 114416 | ||||||| || |||||| ||||| Sbjct 1985768 ATAACTGATTTAATGAGCCGTTCGT 1985792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCACGTTATCCAAGTAAC-TGAGTAAGATCTAAGGAACC 115588 |||||||| || |||||||| ||| |||||||||||||| |||| |||| |||||||| Sbjct 1985709 CATGTATTAGCCCTAGAATTGCCA-GTTATCCAAGTAACATGAGAGCGATCAAAGGAACC 1985767 Query 115589 AAAACTGATATATTGAGCCATTCGT 115613 | ||||||| || |||||| ||||| Sbjct 1985768 ATAACTGATTTAATGAGCCGTTCGT 1985792 >seq166 Length=972737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || ||||| ||||| || ||| ||||||||| |||||||| || | Sbjct 969679 CCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 969620 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||| |||||||| ||||| || || |||||||| || Sbjct 969619 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTC 969567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397060541747968