Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq166 136 9e-27 seq81 127 5e-24 >seq166 Length=972737 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| |||||| Sbjct 969664 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 969605 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || ||||| |||||||| || |||||| || ||||| ||| Sbjct 969604 TCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGG---TCTGGGGGGATGCCTTCCTTA 969548 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || ||||| || || || || | ||||| | ||| || || || ||||| Sbjct 969547 TCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCGACCTCCAGAGTGATG 969488 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| ||||| |||||||| Sbjct 969487 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 969453 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 969436 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 969377 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 || | || || || |||||||| |||||||| || ||||| ||| |||||||| Sbjct 969376 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG---TCTGGAGGGATGCCTTCTTTG 969320 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 ||||||||||| || || || || || || | ||||| | || || || || ||||| Sbjct 969319 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 969260 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| ||||| |||||||| Sbjct 969259 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 969225 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | ||| ||||| || ||| Sbjct 969208 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 969149 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || |||||||| | ||| || ||||| ||||| |||||| Sbjct 969148 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTATCC 969089 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| || || || ||||| || | || || | || || || | ||||| ||| Sbjct 969088 TGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTC 969029 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || |||||||| Sbjct 969028 TTACCAGTGAGGGTCTTCACAAAGATCTGCAT 968997 >seq81 Length=8687835 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | || ||||| || ||| Sbjct 2926631 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 2926572 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||| | ||| ||| |||||| || ||||| || Sbjct 2926571 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTG 2926515 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || |||||||| || || | ||||| | ||| || || || ||||| Sbjct 2926514 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCAAGGGTGATG 2926455 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || |||||||| ||||||||||| Sbjct 2926454 GTCTTACCAGTGAGGGTCTTGACAAATATCTGCAT 2926420 Score = 125 bits (138), Expect = 2e-23 Identities = 176/245 (72%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 288232 ATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGG 288291 |||||| || || ||||| | || | || || ||||| | || |||||| ||| Sbjct 2939735 ATGATTTAT---TGACCACCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGG 2939679 Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 ||||| ||||| | || ||||| || ||||| | || || || || |||||||| | | Sbjct 2939678 ATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTC 2939619 Query 288352 TGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || |||||| || ||||| || |||||||| || || |||||||| || || Sbjct 2939618 TGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATG 2939562 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | ||||| | || || || || ||||| ||||| || || || ||||||||||| || Sbjct 2939561 GTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATT 2939502 Query 288469 TGCAT 288473 ||||| Sbjct 2939501 TGCAT 2939497 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || ||||| || ||||| | || || || || || Sbjct 2925927 TTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 2925868 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| ||| |||||| || ||||| |||||||||||||| || || || Sbjct 2925867 GATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTATCCTGGATTTTTGCCTTGAC 2925811 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | |||||| | || || || | ||||| ||||| || || || ||||| Sbjct 2925810 ATTCTCAATGGTATCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTT 2925751 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 2925750 CACAAAGATCTGCAT 2925736 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | ||| ||||| || ||||| | || || || || || Sbjct 2926155 TTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 2926096 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| ||| |||||| || ||||| || |||||||| || || || || Sbjct 2926095 GATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 2926039 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | || || || || ||||| ||||| || || || ||||| Sbjct 2926038 ATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTT 2925979 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 2925978 GACGAAGATCTGCAT 2925964 Score = 118 bits (130), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||| | || ||||| || ||| Sbjct 2927087 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 2927028 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||| | ||| ||| |||||| || ||||| || Sbjct 2927027 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTG 2926971 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || |||||||| || || | ||||| | || || || || ||||| Sbjct 2926970 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATG 2926911 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||||||||| || ||||| Sbjct 2926910 GTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2926876 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || ||||| || ||||| | || || || || || Sbjct 2927523 TTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 2927464 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || |||||| || ||||| || |||||||| || || || || Sbjct 2927463 GATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 2927407 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||||| | ||| || || || ||||| ||||| || || || ||||| Sbjct 2927406 ATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTT 2927347 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 2927346 GACGAAGATCTGCAT 2927332 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | ||| ||||| || ||||| | || || || || || Sbjct 2926383 TTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 2926324 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || |||||| || ||||| || |||||||| || || || || Sbjct 2926323 GATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 2926267 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | || || || || ||||| ||||| || || || ||||| Sbjct 2926266 ATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTT 2926207 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 2926206 GACGAAGATCTGCAT 2926192 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | ||| ||||| || ||||| | || || || || || Sbjct 2939232 TTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 2939173 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || |||||| || ||||| || |||||||| || || || || Sbjct 2939172 GATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 2939116 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | || || || || ||||| ||||| || || || ||||| Sbjct 2939115 ATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTT 2939056 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 2939055 GACGAAGATCTGCAT 2939041 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || ||||| || ||||| | || || || || || Sbjct 2939460 TTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 2939401 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || |||||| || ||||| || |||||||| || || || || Sbjct 2939400 GATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 2939344 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||||| | ||| || || || ||||| ||||| || || || ||||| Sbjct 2939343 ATTCTCAATGGTGTCGCTGGGTTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTT 2939284 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 2939283 GACGAAGATTTGCAT 2939269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648596100352