Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq136 181 1e-40 seq166 98.7 1e-15 seq81 86.0 6e-12 >seq136 Length=1264375 Score = 181 bits (200), Expect = 1e-40 Identities = 910/1427 (64%), Gaps = 42/1427 (3%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | |||| || ||||| ||||| || || || || |||| || || Sbjct 717416 TTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTG 717357 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| || || |||| || ||||||| || | ||||||| | Sbjct 717356 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGC 717297 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| || ||||| | | || ||| | ||||||||||||||| | || Sbjct 717296 AGCTTCCAGTCGCACAGGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGGTGCCC 717237 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| | ||| ||| || |||| |||| |||| || | |||||| ||||| Sbjct 717236 TTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCGCA 717178 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| || ||| || | ||||| | || Sbjct 717177 GCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGC 717118 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||| || | || |||| ||| | ||||| || |||| |||||| | ||| Sbjct 717117 CTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACC 717058 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGGGATAGTGAT 153492 || || || || || || || |||| | | ||| || | | ||||||| | Sbjct 717057 GATTCCTATTGGCCGGTGGCGCTTGTTGGACCTC-TCGGCTTCAACCACTGGATAGTAGT 716999 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTA-AGTTTC 153551 | || || || ||||| ||||| || | ||||| || | | | | ||||| Sbjct 716998 TAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCA-CATATGACAGTTTT 716940 Query 153552 TCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAG 153610 | || ||| ||||| || | | ||||| || || | || || || ||||| Sbjct 716939 TTAAAGTCAAAGGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGAGCGATGGAGGCCAG 716884 Query 153611 ATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCT 153670 |||||| || ||| ||| ||| | | |||| | || || || | |||||||||||| Sbjct 716883 ATTACACACCGCCACCTCATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCT 716824 Query 153671 GCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAG 153730 |||||| ||| ||||| ||| ||||| ||||| || | ||||| ||||||||| | || Sbjct 716823 GCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAG 716764 Query 153731 CATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTG 153787 |||||||||| || || || || | ||| | || | ||| || | ||| Sbjct 716763 CATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACC---ACACCTGCTG 716707 Query 153788 CGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTC 153844 || || ||| |||| || | ||||| |||| ||| ||| || |||| Sbjct 716706 AGCCTTCACCACTCGCT--TGA-CCCTCCCCTCCTTCTCATATTTGGTGTAGAGCTGCTC 716650 Query 153845 AAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA 153904 |||||| || || |||| ||| | || ||||| |||| | |||||||||||| ||||| Sbjct 716649 AAACTCCTCCCCCCAGCATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCA 716590 Query 153905 CATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAG 153964 | || | | || | |||||||| || || | ||| || || || | || Sbjct 716589 GTCTTGGTTGCTCTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAAAAAAG 716530 Query 153965 GTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAG 154022 || | || | |||| || ||| ||| |||| ||||| | || | | | | Sbjct 716529 ATCTCTGGCCCTTTGC--TCATCCTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAC 716472 Query 154023 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCGCCC 154079 | ||| |||||| || || | ||| | ||| | ||| || | | || |||||| Sbjct 716471 ACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCCGCCC 716412 Query 154080 TGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCG 154139 || ||||| | ||| || | |||||| | || | || |||||| |||| || | | | Sbjct 716411 TGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATTAGAG 716352 Query 154140 GTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCA 154199 ||||||| || | ||| | ||| || || | ||||||| | | ||||| Sbjct 716351 TTGCCGTTTGTGCCAGCGATGTAGCTCCC-----CGTTGATCTGATGCAGCTGACCGCCA 716297 Query 154200 -----ATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATG 154253 || || || |||| | || || ||| || || | |||||| || ||| Sbjct 716296 CACCGATTCCTCCAGCCG-ATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATG 716238 Query 154254 CCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGC 154313 || || ||||| || || | | | |||| ||| || | ||| || || || Sbjct 716237 CCTTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTG 716178 Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 ||||| || ||||| || ||| ||||| || ||| | | || | | | Sbjct 716177 GTTCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGACAGAAGGTTG 716118 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 || || || ||||| | ||||||||| ||| ||||||| | || | ||||||| Sbjct 716117 TAGGTCTCAATGGCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGAGC 716058 Query 154434 ATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 |||||||||||||| || || ||| | | |||||||| || || Sbjct 716057 ATGTGCTGCGGACGCTCAGCCACTTTGCCGGTGATCTTCAACAGGTA 716011 >seq166 Length=972737 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 969452 GCCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 969393 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || || || |||| |||| |||||||| ||||| ||||| Sbjct 969392 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGG 969333 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| |||||| || | | || | ||||||| | | ||| || Sbjct 969332 GATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGAC 969273 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | || || ||||| || || || || || ||||||||| || Sbjct 969272 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCT 969221 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | || | ||| | | | |||||||| || ||||||||||| Sbjct 969224 GCCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 969165 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || || || || | | |||| || | ||| ||||||||||| Sbjct 969164 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAGG 969105 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || |||||| || | | ||| | |||||| | | ||| || Sbjct 969104 GATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAAC 969045 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||| || || || ||||| |||||||| Sbjct 969044 CTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 968997 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 969679 CCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 969620 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || || | | |||| |||||||| ||||| || || Sbjct 969619 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 969560 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || ||| | | || | ||||||| | | || ||| Sbjct 969559 ATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCGACC 969500 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || ||||| || || || || || ||||||||| || Sbjct 969499 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCT 969449 >seq81 Length=8687835 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | ||| | | | |||||||| || ||||||||||| | Sbjct 2926646 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2926587 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| || | ||| || || || || Sbjct 2926586 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2926527 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||||||| | | || ||| Sbjct 2926526 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACC 2926467 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| || || || ||||| |||||||| Sbjct 2926466 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAATATCTGCAT 2926420 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| || ||||| || | ||| | | | || || || || ||||||||||| Sbjct 2926874 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAG 2926815 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| || | ||| ||||| || || Sbjct 2926814 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2926755 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||||||| | | ||| ||| Sbjct 2926754 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACC 2926695 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| || || || ||||| |||||||| Sbjct 2926694 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 2926648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260017940480