Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq199 127 3e-24 seq201 114 2e-20 >seq199 Length=11596915 Score = 127 bits (140), Expect = 3e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || | |||||| || ||| ||| || |||||||||||||| ||||||||| || Sbjct 7992671 GCAGTGTTGATGATGTCAAAGCCTGCGTTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 7992730 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| |||| | || || | ||| || || || |||| ||| | Sbjct 7992731 GGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGAAAGGGGCTCCCATCTCCACC 7992790 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || ||||||||| | | |||||||| || | | ||| | |||||| Sbjct 7992791 ATGGTCTCCCCAAAGATGGCATTAGCCCTGGGTTTTTCCACCAGCAGGCCTGGGTAGAGC 7992850 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| ||||| | || || | | |||| | || || || || ||||| ||| Sbjct 7992851 TCCACAGCGTCGACATGTCCGTACATCTCCTCCAGCAGTGCGGCCATTTCTTTCTCTCCT 7992910 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 9541 ATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCT 9600 ||| | ||| ||| |||| ||| | |||||| |||| ||||| ||||| || | || Sbjct 7993938 ATGTGGAAAGTATCGGGCATCAGCGGGTGCCAGTGGTACAGGGTGTTGAATTCTGAAGCA 7993997 Query 9601 ATTCGGTTCTGGTACT-GAAAGGC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCT 9658 || ||||||||||||| |||| || ||| ||| || | ||| |||||||| | |||| Sbjct 7993998 ATGCGGTTCTGGTACTGGAAACGCTGGT--TGAAGAGCAGCTCAGGGTCAAACTTGAGCT 7994055 Query 9659 GGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCC 9718 |||||| || || || || ||||| || || | ||| | ||| || ||||| || | Sbjct 7994056 TGAAGTGATAGCCACTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCAC 7994115 Query 9719 C 9719 | Sbjct 7994116 C 7994116 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || || ||||| || || | |||||| |||| || |||||| | | || | Sbjct 7994521 GATGAGCCGTGTGGTCTGGAAGAGTCTTTCGTCATCCCAGTCGGGGTGTACCTCCTTCAA 7994580 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || |||| ||||||||| | |||||| ||||||||||||||||| | ||| || Sbjct 7994581 CACATCACACACCCGGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATCAGACCAGG 7994640 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | || || | || | ||||| || ||||| || ||||| || | || | Sbjct 7994641 GACCAGGCCGAATGCCTCGTGGCCCACAGCGAAGCGGTGAGAGTCGGGGACATGAGGGGG 7994700 Query 9906 ATACAGCATAT--GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTC 9959 || |||| | ||||| || |||| || || ||||| ||||| || || || Sbjct 7994701 GTAGTGCATGTCGACACCTACTTC-CTTT-ACTGTTGGGGGGTACATCTCTCCATC 7994754 >seq201 Length=2273880 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| ||||| | || ||| || || |||||||||||||| ||||| ||| | ||| Sbjct 1863780 GTTTTGACGATATTGAAGCCTGTCTCTCCCCCGAAGGTGCTGGGCTTCCAATACTCAGGG 1863721 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||||||||| ||| ||| || ||||||| ||| || ||||| |||| ||| | || Sbjct 1863720 GAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCAACCATA 1863661 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 |||||||| || || || ||||| | ||| || | |||| |||| ||| | || Sbjct 1863660 CTCTCACCAAATATACCATTCGGACGTGCTTTCTCCAGCATGACTCCAGGGTAAAACTCC 1863601 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | ||| || | ||| || ||||| Sbjct 1863600 AAAGCATCAATGTCCCCGTAGAG 1863578 Score = 93.3 bits (102), Expect = 6e-14 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 9715 TCCCCNNTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || || ||||||| || | ||||| || || | |||||| ||| |||| || ||| Sbjct 1860263 TCACCAATAATGATGAGCCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGT 1860204 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || || || ||||| ||||| |||||||| || |||||||||| |||||||||||| Sbjct 1860203 TCAGCCTTAAGGACATCACAGACTCTGTTGTGCTCCCTCAGCCATACGGTGGCGTACATG 1860144 Query 9835 ATTAAACCCGGCA 9847 | | |||||||| Sbjct 1860143 GTGAGACCCGGCA 1860131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723724526105600