Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq136 206 3e-48 seq65 91.5 2e-13 seq119 89.7 6e-13 >seq136 Length=1264375 Score = 206 bits (228), Expect = 3e-48 Identities = 838/1299 (65%), Gaps = 30/1299 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| |||| ||||| |||| ||| ||||| |||||| Sbjct 717422 TAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 717363 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 ||||||||||| || |||| || |||||||| | | || | || ||| Sbjct 717362 GCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 717303 Query 116023 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080 || || | ||||||| | | | || | | | | ||||||||| || |||||| Sbjct 717302 TTCAGCAGCTTCCAGTCGCACAGGTCAG--TGGGCGTCTTCTCCCACATGTCGTACTGGA 717245 Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 116140 || | || | | | || || || ||| | ||||| || ||||| | | |||| Sbjct 717244 GGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGAGCTCGGCGGCCA 717185 Query 116141 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 ||| |||| ||||| ||||| |||| || || |||||||| ||| | || | Sbjct 717184 GCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGCA 717125 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 || |||||| | ||||| | | |||| || || || |||| || | ||| | Sbjct 717124 GCTGAGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGCCAAACCCT 717065 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACGGGA 116319 | ||||||| || ||||| || || | | | || ||| | ||| || |||| ||| Sbjct 717064 GAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCG-GCTTCAACCACTGGA 717006 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || | || || | | | || || || ||| || || || || | | |||| Sbjct 717005 TAGTAGTTAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCACAT-ATGA 716947 Query 116380 -AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438 || |||| | ||||| | || ||| |||| ||| | || ||||| || Sbjct 716946 CAGTTTTTTAAAGTCAAAGGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATGGA 716890 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 |||||||||||||| | |||||| | ||||| || | |||||| || || | Sbjct 716889 GGCCAGATTACACACCGCCACCTCATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAG 716830 Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 || | || |||||||||| |||| || || ||| |||| || || || || Sbjct 716829 GTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 716770 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT- 116617 ||| ||||| || || || ||||| || || ||||| | | ||| || | ||| || | Sbjct 716769 GTACAGCATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACCACACCTG 716710 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCT 116677 | | | || || | || ||| | | |||||||| ||| || || |||||||| || Sbjct 716709 CTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCATATTTGGTGTAGAGCTGCT 716651 Query 116678 CAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 ||||||| || ||| |||| || ||||| || || | ||||| | |||||| Sbjct 716650 CAAACTCCTC-CCCCCAGCATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGAC 716592 Query 116737 CA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 || ||| | |||| || | ||||||||| | ||| |||||||| || || | Sbjct 716591 CAGTCTTGGTTGCTCTCC---ACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAA 716535 Query 116794 AAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 || ||||| | | | ||| | | | ||| || || || ||||| ||||| Sbjct 716534 AAAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTG-TTCTTCTTCAGCTCCAGGAAGTC 716476 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGAC 116908 | | || |||||| || |||||||||| |||| | || || | | | Sbjct 716475 AAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTG-C 716417 Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT 116968 | |||||| ||||| | |||||| ||| | || | ||||| || | | ||||| Sbjct 716416 CGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCAT 716357 Query 116969 CAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGC 117027 ||| | ||| ||||| || ||| | | ||| | ||||| | || | Sbjct 716356 TAGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTT-GATCTGATGCAGCTGACCGCC 716298 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 | ||| || || || ||| | || ||||| | || || | | | || || | || || Sbjct 716297 ACACCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATG 716238 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || || || |||| |||| | || | ||||||||||| |||| |||||||| Sbjct 716237 CCTTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTG 716178 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || || ||||||||||| || || | |||||| ||||| Sbjct 716177 GTTCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAAC 716139 >seq65 Length=22759279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||| | Sbjct 20259748 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20259689 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| |||||| || || |||||||||||||| |||||||| ||||| | Sbjct 20259688 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20259629 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 20259628 CCACCACACGCTC 20259616 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||| | Sbjct 20277584 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20277643 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| |||||| || || |||||||||||||| |||||||| ||||| | Sbjct 20277644 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20277703 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 20277704 CCACCACACGCTC 20277716 >seq119 Length=8001379 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||||| | ||||| | | |||||||| |||| ||| ||||| ||||| Sbjct 7004604 TAGATGTTACTGGTGTACGCCTCAATGGATTCATTGTTGCCCAGGATCTGGGCAGTGGAA 7004545 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| || ||||| Sbjct 7004544 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 7004513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504255165440