Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq136 152 8e-32 seq199 96.9 6e-15 >seq136 Length=1264375 Score = 152 bits (168), Expect = 8e-32 Identities = 298/436 (68%), Gaps = 6/436 (1%) Strand=Plus/Minus Query 204165 TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGG 204224 |||| ||| | ||| || || |||| ||||||||| |||||||| || |||| |||| Sbjct 717484 TCAGGTCCTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGG 717425 Query 204225 TGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGC 204284 || | | |||| | ||| | | || | | |||||||||||| | ||||| |||||| Sbjct 717424 TGTAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 717365 Query 204285 TGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC 204344 ||| |||||||| || ||||| |||||| ||| | ||| |||| || || | | Sbjct 717364 AGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCT 717305 Query 204345 GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAA 204404 |||||| |||||||| || || |||| || ||||||||||| |||| | Sbjct 717304 CCTTCAGCAGCTTCCAGTCGCACAGGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGA 717245 Query 204405 AGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCTTCTGCC 204463 | |||| | ||||| || ||| | |||||| || ||| || ||| | ||| Sbjct 717244 GGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGA-GCTCGGCGGCC 717186 Query 204464 AGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTA-- 204521 |||| ||| || ||| |||| ||||| |||||||||||||| || | ||| | Sbjct 717185 AGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGC 717126 Query 204522 ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGC 204581 | ||| ||||| | | ||||| | ||| || || | || | || ||||| | Sbjct 717125 AGCTG--AGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGCCAAAC 717068 Query 204582 CCTGCACTCCGATTCC 204597 |||| || |||||||| Sbjct 717067 CCTGAACACCGATTCC 717052 Score = 149 bits (164), Expect = 1e-30 Identities = 518/794 (65%), Gaps = 22/794 (3%) Strand=Plus/Minus Query 204841 GGCGGCCAGATTGCACACCGCGGG-TCTGTGTGGCTCGCTCACCTCCACGATCTCGGTGC 204899 || ||||||||| |||||||| || |||||| | | || || || || |||| Sbjct 716892 GGAGGCCAGATTACACACCGCCACCTCATCGTGGCTGGTGTAT-TCAACAATTTCTGTGC 716834 Query 204900 ACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGT 204959 | | ||| | ||| || | |||| || ||||||||| ||| | ||| |||| || Sbjct 716833 AGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 716774 Query 204960 CCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACA 205019 | ||||||| |||| |||| | || | || |||| ||| | |||| ||||| Sbjct 716773 CTTTGTACAGCATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACCACA 716714 Query 205020 ATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACA 205076 | |||||| ||||| |||| || | |||| | ||| ||||| ||||| | Sbjct 716713 CCTGCTGAGCCTTCACCACTCGCTTGAC---CCTCCCCTCCTTCTCATATTTGGTGTAGA 716657 Query 205077 GCGCCACAAAGTCAGAACCGTA-CA--CGTCCATCAGCCCTGGACATTTTTTGGGACACA 205133 || | |||| || || | || |||||| |||| || || | || ||||||| Sbjct 716656 GCTGCTCAAACTCCTCCCCCCAGCATTCGTCCA---GCCCGGGGCACTCGTTCGGACACA 716600 Query 205134 TCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGC 205193 |||||||||| || | | | ||| |||| ||| |||| ||| ||||||||| Sbjct 716599 TCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGTG 716540 Query 205194 CGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCC 205253 | ||||| ||||| | |||||| | || | || |||||| |||| ||||| Sbjct 716539 CATAAAAAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTGTTCTTCTTCAGCTCCAG-G 716481 Query 205254 AAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTG 205312 ||| | | | ||| |||||| ||||| | ||| ||| | || || || |||||| Sbjct 716480 AAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTG 716421 Query 205313 TTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGA 205372 || || |||||||| || || | | | |||| |||||| |||||| || |||||| Sbjct 716420 TTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGA 716361 Query 205373 CCGTTGGCGGTCCCGTTCGTGCTGTTGATG--GCCGAGCCTTCAGCCCTCACGTTGGAGA 205430 || || | | | ||||| |||| |||| || | || | || | | | || Sbjct 716360 CCATTAGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTT--GATCTGATGCAGCTGA 716303 Query 205431 TGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGT 205490 ||| | || || || |||| | |||| ||| |||| || | | ||| ||| | Sbjct 716302 CCGCCACACCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCAT 716243 Query 205491 AGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCA 205549 | |||||| | ||| || ||| || | | ||| |||| || ||||| |||| Sbjct 716242 AAATGCCTTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGC- 716184 Query 205550 AAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAA 205609 |||||| || |||| |||||| || || |||||| |||| | | |||| || | Sbjct 716183 CTGTTGGTTCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGACAGA 716124 Query 205610 CACCTGTAGGTCTC 205623 |||||||||| Sbjct 716123 AGGTTGTAGGTCTC 716110 Score = 114 bits (126), Expect = 2e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| ||| || || || ||||| ||||| Sbjct 718158 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCGATGTGGATGTT 718099 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 ||| |||||||| ||||||||| | |||||| || || |||||||| || | ||||||| Sbjct 718098 CAGGGACTGGCTCTGGTCGATGTA-GGCGCCACGGTCGGCGGCCATCTTCAGTATGGTCT 718040 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || ||||||||||| || Sbjct 718039 TCTGGGAGATTTCCCACACCGTTTT 718015 >seq199 Length=11596915 Score = 96.9 bits (106), Expect = 6e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 200191 AGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAATATCACGAAGT 200250 ||| |||||| | || |||| ||| || ||||||||||||||||| ||||| | ||||| Sbjct 2239435 AGAGTGGTTCAGAAGCACATTGACTCTTCAGGATGACCCTTGTAAGAAATACTATGAAGT 2239494 Query 200251 GCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 ||||| ||||||||||||| | || || |||||||||| Sbjct 2239495 CCTCATGGTCAACCCCGTTCTGCTGGTACCCCCAACCAAGG 2239535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151383255040