Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq166 140 4e-28 seq81 131 2e-25 >seq166 Length=972737 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || |||||||| | ||| | ||| ||||| | || |||||| ||||| ||||||||| Sbjct 969682 TTTCCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 969623 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || ||||| |||| || ||||||||||| || || || | ||||||||||| | Sbjct 969622 GAGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGG 969563 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||||| ||| |||||| |||| || | | |||||||| | ||| Sbjct 969562 GGGATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCG 969503 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 969502 ACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 969453 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||| | ||| ||||| | || |||||| ||||| |||||||||| Sbjct 969453 TGCCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 969394 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||||||||| || | ||||||||||| | | Sbjct 969393 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAG 969334 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| ||| || ||||| || | | |||||||| | || | Sbjct 969333 GGATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGA 969274 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 969273 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 969225 Score = 118 bits (130), Expect = 1e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||| | ||| ||||| | || |||||| ||||| |||||||| | Sbjct 969225 TGCCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 969166 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 969165 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAG 969106 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| ||| || ||||| | | | ||||| || | || | Sbjct 969105 GGATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAA 969046 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| || || || || || || |||||||| ||||| ||| Sbjct 969045 CCTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATCTTG 968993 >seq81 Length=8687835 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | ||| || || ||||| |||||||| || Sbjct 2939495 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 2939436 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || |||| | ||||||||| | || Sbjct 2939435 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2939376 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | |||||||| | ||| || Sbjct 2939375 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGTTCAACC 2939316 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || || || || || || ||||||||||| Sbjct 2939315 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2939269 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||||| || ||||| | ||| || || |||||||||||||| | Sbjct 2927332 TGCCTCCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAGTCAG 2927273 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||||||| || |||| | ||||||||| | | Sbjct 2927272 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGG 2927213 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | |||||||| | || | Sbjct 2927212 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAA 2927153 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| || || || || || || |||||||| ||||| Sbjct 2927152 CCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 2927104 Score = 129 bits (142), Expect = 7e-25 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 46348 TTGTGTACTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTT 46407 ||||| || | ||| | || || || | ||||| || ||||| | ||| || || Sbjct 2927577 TTGTGAACCAGTTTACTGCCCGCCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTT 2927518 Query 46408 TTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAA 46467 ||||| |||||||| || || ||||| | || || |||||||||||||| || |||| Sbjct 2927517 CTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAG 2927458 Query 46468 GCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCAC 46527 | ||||||||| | || | || ||||||||| |||||| ||||| || | | Sbjct 2927457 CCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAAT 2927398 Query 46528 CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGAT 46587 |||||||| | ||| || |||| |||||||| || || || || || || || ||||| Sbjct 2927397 GGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGAT 2927338 Query 46588 TTGCAT 46593 ||||| Sbjct 2927337 CTGCAT 2927332 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || || | ||||| || ||||| | ||| || || ||||||||||| Sbjct 2939730 TTATTGACCACCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATATTGTA 2939671 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || ||||| | || || |||||||||||||| || |||| | ||||||||| Sbjct 2939670 GTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTC 2939611 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| |||||| ||| | || | | |||||||| | Sbjct 2939610 TGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGG 2939551 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| |||||||| || || || || || || || ||||||||||| Sbjct 2939550 CTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2939497 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | ||| || || ||||| |||||||| || Sbjct 2926874 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAG 2926815 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || |||| | ||||||||| | || Sbjct 2926814 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2926755 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | |||||||| | || || Sbjct 2926754 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACC 2926695 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || || || || |||||||| ||||| Sbjct 2926694 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 2926648 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | || |||||| ||||| |||||||| || Sbjct 2927102 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2927043 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || |||| | |||||| || | || Sbjct 2927042 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2926983 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | |||||||| | || || Sbjct 2926982 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACC 2926923 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || || || || || ||||||||||| Sbjct 2926922 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2926876 Score = 123 bits (136), Expect = 3e-23 Identities = 169/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | ||| || || ||||| |||||||| || Sbjct 2939267 CCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAG 2939208 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || |||| | ||||||||| | || Sbjct 2939207 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2939148 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 2939147 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACC 2939088 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCAC 46600 || | |||||||| ||||| || || || || || ||||| ||||| | ||||| Sbjct 2939087 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGTCTGCAC 2939033 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | || |||||| ||||| |||||||| || Sbjct 2926646 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2926587 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || |||| | |||||| || | || Sbjct 2926586 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2926527 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | |||||||| | ||| || Sbjct 2926526 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACC 2926467 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || || || || || ||||| || ||||| Sbjct 2926466 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAATATCTGCAT 2926420 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | ||| || || ||||| |||||||| || Sbjct 2925962 CCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 2925903 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || |||| | |||||| || | || Sbjct 2925902 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2925843 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| ||| || ||||| || | | || ||||| | || || Sbjct 2925842 ATGCCTTCCTTATCCTGGATTTTTGCCTTGACATTCTCAATGGTATCGCTGGGCTCAACC 2925783 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| || || || || |||||||| ||||| ||| Sbjct 2925782 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTTG 2925732 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||||| || ||||| | ||| || || ||||| |||||||| | Sbjct 2926192 TGCCTCCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTG 2926133 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 2926132 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 2926073 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | ||||| || | || | Sbjct 2926072 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 2926013 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 2926012 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 2925964 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | ||| || || ||||| |||||||| || Sbjct 2926418 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAG 2926359 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || |||| | ||||||||| | || Sbjct 2926358 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2926299 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 2926298 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACC 2926239 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || || || || || || ||||| ||||| Sbjct 2926238 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 2926192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235686855680