Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq166 154 1e-32 seq81 143 3e-29 seq65 102 8e-17 >seq166 Length=972737 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| ||| | Sbjct 969225 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 969284 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || || || | ||||| Sbjct 969285 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCAGACCAG 969344 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| ||||| || || | ||||||||| |||||||||| Sbjct 969345 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 969404 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || ||| | ||||| ||| |||| || ||| Sbjct 969405 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGGC 969452 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| ||| | Sbjct 969453 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTCGAACCCAGC 969512 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| || || || || || ||| | ||||| Sbjct 969513 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 969572 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| |||||||| |||| ||||||||| |||||||||| Sbjct 969573 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAAC 969632 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | ||||| ||| ||||||| || Sbjct 969633 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGAGGAGG 969679 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || ||||| || || |||||||| | || || ||| || Sbjct 968994 AAGATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACTTTGGAGGTTGAGCCC 969053 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | || | ||||||| || || || || || || | ||| Sbjct 969054 AGTGACACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATCCCTCCGGAC 969113 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | ||||||||| |||||| Sbjct 969114 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAC 969173 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || || ||| | ||||| ||| |||| || ||| Sbjct 969174 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGGC 969224 >seq81 Length=8687835 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || || ||| ||| | Sbjct 2926648 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGC 2926707 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | ||||| Sbjct 2926708 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 2926766 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 2926767 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAA 2926826 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || || ||| | || |||||| |||||||||| Sbjct 2926827 CATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGCGG 2926874 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| | || || || ||| | Sbjct 2939269 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAACCCAGC 2939328 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2939329 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2939388 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 2939389 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 2939448 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || ||| | || |||||| |||||||||| Sbjct 2939449 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGCGG 2939495 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| | || || ||| ||| | Sbjct 2926876 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGC 2926935 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 2926936 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 2926994 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 2926995 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 2927054 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | || |||||| ||||||| || Sbjct 2927055 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2927102 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || || ||| | | Sbjct 2926192 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGT 2926251 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2926252 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2926311 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2926312 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 2926371 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || ||| | || |||||| |||||||||| Sbjct 2926372 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGCGG 2926418 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | | Sbjct 2939041 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 2939100 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2939101 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2939160 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2939161 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAAC 2939220 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || ||| | || |||||| ||||||| || Sbjct 2939221 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2939267 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| Sbjct 2925964 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2926023 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | || || Sbjct 2926024 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2926083 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2926084 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 2926143 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| | || |||||| |||| || ||| Sbjct 2926144 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGAGGC 2926191 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || ||||| ||||| ||||||||| | || || ||| || Sbjct 2925733 AACATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGCCC 2925792 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | | | | | | || | |||||||| || || || || |||||| | || Sbjct 2925793 AGCGATACCATTGAGAATGTCAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCAGAT 2925852 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | |||||||| |||||| Sbjct 2925853 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTAC 2925912 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || ||| | || || ||| | || |||||| ||||||| || Sbjct 2925913 AACATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2925962 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || || || ||| | Sbjct 2927332 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAACCCAGC 2927391 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2927392 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2927451 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 2927452 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 2927511 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || ||| | || |||||| |||| ||||| Sbjct 2927512 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGCGG 2927558 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || ||||| || || ||||||||| | || || || ||| | Sbjct 2926420 ATGCAGATATTTGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAACCCAGC 2926479 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 2926480 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 2926538 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 2926539 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 2926598 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | || |||||| ||||||| || Sbjct 2926599 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 2926646 >seq65 Length=22759279 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||| ||||| || |||| |||||| |||| Sbjct 20259008 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCAGCGAAGAACGCCAACACGTGAGAGATG 20258949 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | | ||| | ||| |||| |||||||| || |||||| |||||||||||| Sbjct 20258948 AAGTACCTCTCCTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTCGACAGGTCCACC 20258889 Query 133399 T 133399 | Sbjct 20258888 T 20258888 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||| ||||||||||||||||||||||| || |||| |||||| |||| Sbjct 20278366 ACCAGGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAACACGTGAGAGATG 20278425 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | | ||| | ||| |||| |||||||| || |||||| |||||||||||| Sbjct 20278426 AAGTACCTCTCCTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTCGACAGGTCCACC 20278485 Query 133399 T 133399 | Sbjct 20278486 T 20278486 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||||||| ||||| || ||||| | |||||||||||||| || || Sbjct 20278044 GTAGGTGTCGATGAGGAGGCTGTACATCTCAGAGTGGATATTCTCCATGGCGATCTGGAA 20278103 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || |||| ||||| |||||||||||| || | ||| ||||| ||| Sbjct 20278104 ACCATAGAAACACCTGGCCTCTGTCACCTGCACTTCCTGTGTGAAGCGCTCCACC 20278158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170399170560