Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq211 170 1e-36 seq81 122 7e-22 seq333 93.3 3e-13 >seq211 Length=7687989 Score = 170 bits (188), Expect = 1e-36 Identities = 892/1407 (63%), Gaps = 20/1407 (1%) Strand=Plus/Minus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| ||||| || ||||| || | ||||| || || || | || || || |||| Sbjct 4102396 CACATTCAGAATGCCGTTGGCGTCAATGTCAAAAGTTACCTCGACCTGTGGTACACCTCG 4102337 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 | ||||| ||||| ||| | | ||| | ||||| || || || || || | Sbjct 4102336 GGGGGCAGGAGGGATACCTGTGAGCTCAAACTTGCCCAGGAGGTTGTTGTCCTTGGTCAT 4102277 Query 517384 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 || || ||||| | | || || || | | || |||||||| || || | Sbjct 4102276 GGCTCTCTCGCCCTCATACACCTGAATCAGCACACCTGGCTGGTTATCTGAGTATGTGGA 4102217 Query 517444 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 || | ||||| | | || |||| || || ||||| | | || | ||||||| Sbjct 4102216 GAAGA-TCTGGGTCTGCTTGGAAGGGATGGTGGTGTTGCGTTTGATTAGCGGCGTCATAA 4102158 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 517562 |||||||| || || | || ||||| || |||| || || | || | | || || Sbjct 4102157 CTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCAGCAGCAGCAGATCTT 4102098 Query 517563 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 | | || || || | || | || ||||| || || | || ||||| || || | Sbjct 4102097 GGACGTTCTCCGAGGTGTCGCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTAGGCCA 4102038 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 517681 |||||||||| || || | | | || |||| | | ||||| || |||| || || | Sbjct 4102037 CAGCTTCATCTGGGTTGATGCTCTTGTTCAGTTCTCTGCCATTAAAGAAATCCTGCAATA 4101978 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 || | | || ||||| | | || || ||||| | || |||||||| | || Sbjct 4101977 GCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATTTCATGGATCTTG 4101919 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || |||||||| || | ||| | |||| ||||| || || || | || || Sbjct 4101918 GACTTATCCAGCTTGGCATCTTGAAGGGCTTTCTCAACTGGCTCCAGTGTTCCCCTGAAG 4101859 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 517859 | ||||| || || || || || || || || || | || || || || | Sbjct 4101858 AGCTCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATGGAGGTGTAGAAGTCGATGC 4101801 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 517919 | ||||||| ||| || | ||||| ||| || || || || || | | || | Sbjct 4101800 CCTCGAACAGAGAGTCGATCTCAATGCTAGCCTGGGTGCTGGAGGACAGGGTCCTCTTTG 4101741 Query 517920 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT--TGCTGATTGATTCAAATCTGT 517977 | | ||||| || |||| ||||| | | ||| | || | ||| | | || | Sbjct 4101740 CTCTCTCACAAGCCGTCCGCAGTCTCCTCACCGCTCTCTTGTT--TTGGCTGATGTCCTT 4101683 Query 517978 TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTC 518037 || | ||||| || || || || || | | || | || || ||||| || || Sbjct 4101682 CTTGTGCTTTCTTTTAAATTCCTCTACGAAGTGGTTGACCATCCGGTTGTCAAAGTCCTC 4101623 Query 518038 ACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGA 518097 || || | | || | ||||| || | | |||| | || | ||||| |||| | Sbjct 4101622 CCCACCAAGGTGTGTGTCTCCTGCAGTGGATTTTACCTCAAAGATGCCATCCTCAATGGT 4101563 Query 518098 CAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 518157 || | | || || ||| || ||||| | |||||| || || || || ||| Sbjct 4101562 CAGGATGGACACGTCGAAGGTGCCTCCACCGAGATCAAAGATGAGCACGTTGCGCTCTCC 4101503 Query 518158 GTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 |||| || ||| || || ||||| || | || || || || || || || || || Sbjct 4101502 -TCTT--TTACCTTTGTCCAGGCCATAGGCGATGGCTGCTGCTGTGGGCTCGTTGATGAT 4101446 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 ||||||||||| || |||| ||| |||||| || || |||||||| || || || || Sbjct 4101445 CCTCAAAACATTCAGTCCAGAGATTACTCCTGCGTCCTTGGTGGCTTGCCTCTGAGAGTC 4101386 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGC 518333 || ||||| || || || || || || |||| | || |||| | ||| ||| || Sbjct 4101385 ATTGAAATAAGCTGGCACTGTGATGACTGCATTTGACACCTTCTGTCCCAG-ATAGGCCT 4101327 Query 518334 TTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCT 518393 || | | ||||||||| || | ||| || || |||| || ||| | | || Sbjct 4101326 CGGCTATCTCCTTCATTTTAACCAAGACCATGGACGAGATTTCCTCAGGGTAGAAGGCCT 4101267 Query 518394 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAA 518453 ||| ||| || ||| || | || | || || | | || || || || | Sbjct 4101266 TGGTCTCACCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCGTTGATCACCTTGA 4101207 Query 518454 ATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATC 518513 | |||||| |||||| || || || ||| | ||| ||||| | |||||| || | || Sbjct 4101206 AAGGCCAGAGTTTCATGTCAGACTGGACAATGGTGTCGTTAAACTTTCTACCGATGAGTC 4101147 Query 518514 GTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTC 518573 |||| |||||||| | || ||||| || || || || | || | ||||| ||||||| Sbjct 4101146 GTTTGGCATCAAAGACTGTGTTGGTGGGGTTCATGGCGACCTGGTTCTTGGCAGCATCTC 4101087 Query 518574 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 518633 |||| || ||||| || ||||| | ||||| ||||| || | || || || | Sbjct 4101086 CAATGAGCCTCTCTGTGTCAGTAAAAGCCACATAGCTGGGAGTGGTCCTGTTGCCCTGGT 4101027 Query 518634 CATTCGCAATAATTTCAACTTTACCAT 518660 | || ||||| || || ||||| |||| Sbjct 4101026 CGTTGGCAATGATCTCCACTTTGCCAT 4101000 >seq81 Length=8687835 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229 ||| | |||||| || | ||| || ||||| ||||||||||| |||||||| ||||| || Sbjct 7946803 ATCCAAACCATAAGCGATAGCTGCTGCAGTGGGTTCATTAATGATTCTCAACACATTTAG 7946744 Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289 ||||| || |||| ||||| || || ||||| | ||| || || |||||||||||||| Sbjct 7946743 ACCAGATATGGTTCCAGCATCCTTGGTTGCTTGACGTTGAGAGTCATTAAAATATGCAGG 7946684 Query 518290 AACAGTAATAACGGCAT 518306 || || ||||| |||| Sbjct 7946683 TACTGTGATAACAGCAT 7946667 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | || || |||| ||||| |||||||||||||| || |||| ||||||| Sbjct 7933473 TTTTTGTCCAACCCGTAGGCAATGGCAGCGGCAGTTGGTTCATTGATGATTCGCAAAACA 7933532 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||| ||| | || ||||| |||||||| || | || || || || || || Sbjct 7933533 TTGAGACCAGAGATTGTGCCAGCATCCTTAGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 7933592 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || ||||| || |||| Sbjct 7933593 GCTGGCACTGTAATTACAGCAT 7933614 Score = 89.7 bits (98), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 322231 TTCACTTCCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAAC 322290 ||| | ||| ||||| || || | |||||||||||| ||||||||||| ||| | | || Sbjct 7946808 TTCTCATCC-AAACCATAAGCGATAGCTGCTGCAGTGGGTTCATTAATGATTCTCAACAC 7946750 Query 322291 ATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATA 322350 || || ||| | || | ||| ||| |||||||| | || | |||||||||||| Sbjct 7946749 ATTTAGACCAGATATGGTTCCAGCATCCTTGGTTGCTTGACGTTGAGAGTCATTAAAATA 7946690 Query 322351 TGCTGGTACAGTAATAACTGCTTT 322374 ||| ||||| || ||||| || || Sbjct 7946689 TGCAGGTACTGTGATAACAGCATT 7946666 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || || ||| | |||| ||||||||||||||||| || Sbjct 7946109 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATTAGCC 7946050 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | || || || ||||| | || || || ||||| |||| Sbjct 7946049 TCTCAGTATCTGTGAAGGCCACGTAGCTGGGTGTTGTCCTGTTGCCCTGGTCATTGGCAA 7945990 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| ||||| | || || || | ||| | Sbjct 7945989 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTCCCAAGATCGA 7945930 Query 518703 TACCAA 518708 |||||| Sbjct 7945929 TACCAA 7945924 >seq333 Length=604933 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| |||||||||||| || ||||| || || | | ||| Sbjct 296677 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTCGGCTCATTGATGATACGAAGCACA 296736 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | || |||||||| || || || | || || || || || || Sbjct 296737 TTAAGCCCAGAAATGGTCCCAGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAC 296796 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| ||||| | || |||| ||||| Sbjct 296797 GCAGGCACAGTCACTACAGCATTTGTTAC 296825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780803344655104