Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq136 224 1e-53 seq119 91.5 2e-13 >seq136 Length=1264375 Score = 224 bits (248), Expect = 1e-53 Identities = 964/1496 (64%), Gaps = 66/1496 (4%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| ||||| Sbjct 717516 CTTCATCTCCTCGTTCCACAGTCCTCTCTCCGTCAGGTCCTTGAGCAGATGAGGATTGAC 717457 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | |||| || | |||||||| | ||||||| |||| Sbjct 717456 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTTGTGTAGGCCTCAAT 717397 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | || || || |||| ||| || |||||||||||||| ||||| || |||| || || Sbjct 717396 AGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAG 717337 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTG 106078 ||||| | | || | | ||| ||||| || | | ||||||| | | | Sbjct 717336 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCGCACAGGTC 717277 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAAC 106136 || | || || || ||||||| || | || || |||||| ||| ||||| | Sbjct 717276 AG-TGGGCGTCTTCT-CCCACATGTCGTACTGGAGGGTGCCCTTGCTGACA--GGAGAGC 717221 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | ||| | ||||| |||| || | | | |||| || ||||| |||||||||| | Sbjct 717220 CTTCATACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTTGCCTCCAGGGCGG 717161 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 ||| || ||||| |||||||| | || | | || || || ||||| | Sbjct 717160 CGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGG 717101 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 || || || || || |||| || | ||| |||||||| | || || || | || Sbjct 717100 GGTGACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACCGATTCCTATTGGCCGGT 717041 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGG 106375 | ||| | || ||| | | || || | || ||||| | || |||| |||| | Sbjct 717040 GGCGCTTGTTGGACCT-CTCGGCTTCAACCACTGGATAGTAGTTAATGTCTATGATCTTG 716982 Query 106376 TTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGA-AGTTTTTCATAATCAAAAGT 106431 || || || ||| || || ||||| | | | |||| ||||||| | | ||||| || Sbjct 716981 TTCAGGTTCTTG---ACGATTACTTTGGTCACAT-ATGACAGTTTTTTAAAGTCAAAGGT 716926 Query 106432 GCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGT 106491 || ||| |||| ||| | || ||||| || |||| ||| || || ||| Sbjct 716925 CCG---CTCAGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACCGCCAC 716869 Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| | ||||| || | ||||||||| || | |||| | || || || || Sbjct 716868 CTCATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCC 716809 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || || ||||| |||||||| || || || Sbjct 716808 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACC 716749 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGT 106670 ||| || ||||| || | | ||| || | |||||| | | | | || || | || | Sbjct 716748 CGTTTCTGTCTGGGATTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACTCGC-T 716690 Query 106671 TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 106729 || ||| |||||| ||| || || |||||||| ||||||||||| ||| | || Sbjct 716689 TGACCCTCCCCTCCTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCTC-CCCCCAGCAT 716631 Query 106730 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCA 106786 ||| || || || || || ||||| | |||||||| ||| | |||| Sbjct 716630 TCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCC--- 716574 Query 106787 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 106846 || | ||||||||| | ||| || |||||||| | |||| |||||||| || | Sbjct 716573 ACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTTGC 716514 Query 106847 TCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGG 106905 || || | ||| ||| || | | ||| ||||| || | | || ||||||||| Sbjct 716513 TCATCCTTACCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGG 716455 Query 106906 CTCAAGATAGACTGCGATAGATCCC-------TTTCGACGCCCAGCTTGATTTACATAGC 106958 ||| || || | |||| | |||| | | | ||||| || | ||||| | Sbjct 716454 CTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCCGCCC----TGGTCGACATAAC 716399 Query 106959 GCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCC 107018 |||| ||| ||| | || | ||||| || | | ||||| || | || ||||| | Sbjct 716398 GCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGC 716339 Query 107019 CCCGAATACGAGATTTATTGGCTC-----TCACATCATGGATGTG-----CATCCCAATA 107068 | | ||| || |||| | | | ||| | || || || || Sbjct 716338 C-------AGCGATGTA---GCTCCCCGTTGATCTGATGCAGCTGACCGCCACACCGATT 716289 Query 107069 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128 || |||||| | || ||||| | ||||| | | | || || |||| || || | || Sbjct 716288 CCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCCTTCAATG 716229 Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188 ||| ||||| |||| | |||||||| || |||| ||| || || || || || Sbjct 716228 CTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCTGCG 716169 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTC 107247 |||||||| || || | ||||| ||||| |||| | |||| || ||| ||||| Sbjct 716168 TTGAAGAGTGTAGGAGAAGCGTGGGTGAAC-CACCTCTCTGACAGAAGGTTGTAGGTCTC 716110 Query 107248 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | | | | ||| || || ||||||||||| | ||| | ||| | ||||| Sbjct 716109 AATGGCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGAGCATGT 716054 >seq119 Length=8001379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTT 106560 ||||||||| | || ||||| || | || ||| || || || |||||||||| Sbjct 7003616 TGTGTACTCCACTATCTCTGTGCATAGATT---ACTGGATTTGATGGTGCCCAAATTCTG 7003560 Query 106561 TTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 106620 ||||| ||||| | ||||| || ||||||||||||||||| || || || || || || Sbjct 7003559 CTGGTTGCTCTTCCTATTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTCTGT 7003500 Query 106621 CTGTGACTTGAGAATTGCCTTCCACAC 106647 |||||||| || || || | |||||| Sbjct 7003499 CTGTGACTCGATGATGGCATACCACAC 7003473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977968092160