Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq81 118 7e-22 seq166 102 5e-17 >seq81 Length=8687835 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 2926839 TTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 2926780 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| || ||| Sbjct 2926779 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 2926720 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | || |||||| || | ||| ||||| || || ||||| ||||| || Sbjct 2926719 CTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGAC 2926660 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 2926659 AAAGATCTGCATA 2926647 Score = 114 bits (126), Expect = 8e-21 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 2926383 TTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 2926324 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| ||||| | Sbjct 2926323 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 2926266 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| | |||||| || | ||| ||||| || || ||||| ||||| Sbjct 2926265 TTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTG 2926206 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 2926205 ACGAAGATCTGCAT 2926192 Score = 114 bits (126), Expect = 8e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| || || ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 2927295 TTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 2927236 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| || ||| Sbjct 2927235 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 2927176 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | || |||||| || | ||| ||||| || || ||||| ||||| || Sbjct 2927175 CTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGAC 2927116 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 2927115 AAAGATCTGCATA 2927103 Score = 114 bits (126), Expect = 8e-21 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 2939232 TTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 2939173 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| ||||| | Sbjct 2939172 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 2939115 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| | |||||| || | ||| ||||| || || ||||| ||||| Sbjct 2939114 TTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 2939055 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 2939054 ACGAAGATCTGCAT 2939041 Score = 113 bits (124), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 2926155 TTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 2926096 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| ||| | || | || |||||||| ||||| ||||| | Sbjct 2926095 GATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 2926038 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || ||||| ||||| Sbjct 2926037 TTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 2925978 Query 34968 ACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 2925977 ACGAAGATCTGCATA 2925963 Score = 111 bits (122), Expect = 1e-19 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 2925927 TTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 2925868 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| ||| | || | || ||||| || || || ||||| | Sbjct 2925867 GATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTATCCTGGATTTTTGCCTTGAC--A 2925810 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || |||||| || | ||| ||||| || || ||||| |||||| Sbjct 2925809 TTCTCAATGGTATCGCTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTC 2925750 Query 34968 ACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 2925749 ACAAAGATCTGCATGTT 2925733 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 2927523 TTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 2927464 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| ||||| | Sbjct 2927463 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 2927406 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||||| || | ||| ||||| || || ||||| ||||| Sbjct 2927405 TTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTG 2927346 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 2927345 ACGAAGATCTGCAT 2927332 >seq166 Length=972737 Score = 102 bits (112), Expect = 5e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 969187 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 969128 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || || || ||||| | Sbjct 969127 ATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTT 969068 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| || | || ||||| || || ||||| ||||||||| Sbjct 969067 TCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTCACA 969008 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 969007 AAGATCTGCATCTT 968994 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || Sbjct 969415 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAG 969356 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || || ||||| || || ||||| || Sbjct 969355 ATGAGACGCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGAC--AT 969298 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || ||| || || | ||| ||||| || || ||||| ||||||| Sbjct 969297 TCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 969238 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 969237 CGAAGATCTGCAT 969225 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 969643 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAG 969584 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | || ||||| || ||||| |||||| || Sbjct 969583 ATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGAC--AT 969526 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || || || || | || ||||| || || ||||| ||||||| Sbjct 969525 TCTCAATGGTGTCGCTGGGTTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCA 969466 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 969465 CGAAGATCTGCAT 969453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632080714752