Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq211 131 1e-24 seq333 122 7e-22 seq379 113 4e-19 seq81 100 2e-15 >seq211 Length=7687989 Score = 131 bits (144), Expect = 1e-24 Identities = 380/583 (65%), Gaps = 8/583 (1%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| ||| || ||||| ||| || |||| ||||| Sbjct 4100951 ATTGGCATCGATCTGGGCACCACCTATTCCTGCGTTGGGATTTTCCAGCATGGCAAAGTG 4101010 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || |||||||| || || || ||||| || ||||| ||||| |||| || || Sbjct 4101011 GAGATCATTGCCAACGACCAGGGCAACAGGACCACTCCCAGCTATGTGGCTTTTACTGAC 4101070 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | |||| ||||| || || | || | | | || || ||||| || Sbjct 4101071 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTCGCCATGAACCCCACCAACACA 4101130 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | |||||||| ||||| | || || |||| ||||| || | | ||| ||| | || Sbjct 4101131 GTCTTTGATGCCAAACGACTCATCGGTAGAAAGTTTAACGACACCATTGTCCAGTCTGAC 4101190 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACT 550294 ||||| | ||||||||| | | | || | | ||||| || | || | | Sbjct 4101191 ATGAAACTCTGGCCTTTCAAGGTGATCAACGATAACGGAAAGCCCAAAGTTCAGGTGGAG 4101250 Query 550295 CATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 || |||| || | ||| || | || || |||| || || ||||| || | Sbjct 4101251 TATAAAGG---TGAGAC-CAAGGCCTTCTACCCTGAGGAAATCTCGTCCATGGTCTTGGT 4101306 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 |||||||| | | |||| || | | | || || | || | ||||||| || || Sbjct 4101307 TAAAATGAAGGAGATAGCCGAGGCCTATCTGGGACAGAAGGTGTCAAATGCAGTCATCAC 4101366 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || ||||| ||||| |||||||| || | ||||| || || || || ||| || | Sbjct 4101367 AGTGCCAGCTTATTTCAATGACTCTCAGAGGCAAGCCACCAAGGACGCAGGAGTAATCTC 4101426 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 |||||| |||||| | | || ||||| || || || || || || | || ||||| || Sbjct 4101427 TGGACTGAATGTTTTGAGGATCATCAACGAGCCCACAGCAGCAGCCATCGCCTATGGCCT 4101486 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || ||| ||| ||| | || || |||||||||||| Sbjct 4101487 GGACAAAGGTAAAAGAGGAGAGCGCAACGTGCTCATCTTTGAT 4101529 Score = 125 bits (138), Expect = 6e-23 Identities = 361/553 (65%), Gaps = 2/553 (0%) Strand=Plus/Plus Query 552039 TCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATT 552098 || || ||||| || |||| | || ||||| || ||| | |||| | ||| | Sbjct 4101851 TCAGAGCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAAGCCCTTCAAGATGCCAAGCTG 4101910 Query 552099 GATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATT 552158 ||||| ||||| | |||||||| || || |||||||| || ||||||||||| ||||| Sbjct 4101911 GATAAGTCCAAGATCCATGAAATCGTCCTGGTTGGTGGCTCCACAAGAATTCCCAAAATC 4101970 Query 552159 CGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGA 552217 | | | || || || ||| ||||| | | || | || | || | || ||||| Sbjct 4101971 CAGAAGCTATTGCAGGATTTCTTT-AATGGCAGAGAACTGAACAAGAGCATCAACCCAGA 4102029 Query 552218 TGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGA 552277 ||| ||||| ||||| ||||| ||| | || || ||||| || || | || || Sbjct 4102030 TGAAGCTGTGGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGCGACACCTCGGA 4102089 Query 552278 AAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGT 552337 || | ||| || | | || | || || |||| || ||||| || | || || | Sbjct 4102090 GAACGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATTGAGACTGC 4102149 Query 552338 TGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCG 552397 || || ||||||| || ||| | | || || || || |||| || | | | Sbjct 4102150 AGGTGGAGTTATGACGCCGCTAATCAAACGCAACACCACCATCCCTTCCAAGCAGACCCA 4102209 Query 552398 TGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGA 552457 | || || || || |||||||| || | | ||| ||||| | | ||| || || Sbjct 4102210 GATCTTCTCCACATACTCAGATAACCAGCCAGGTGTGCTGATTCAGGTGTATGAGGGCGA 4102269 Query 552458 AAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCC 552517 ||| | || || || || || | || || | ||| | | |||||| ||||| Sbjct 4102270 GAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGAGCTCACAGGTATCCCTCC 4102329 Query 552518 TGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 ||| || || || ||||| || | || || ||||| || || || ||||| || ||| | Sbjct 4102330 TGCCCCCCGAGGTGTACCACAGGTCGAGGTAACTTTTGACATTGACGCCAACGGCATTCT 4102389 Query 552578 GAATGTGACTGCT 552590 ||||||| | ||| Sbjct 4102390 GAATGTGTCCGCT 4102402 >seq333 Length=604933 Score = 122 bits (134), Expect = 7e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| || || || || |||||||| || || || ||||| ||||||| Sbjct 296818 ATGCTGTAGTGACTGTGCCTGCGTACTTCAATGACTCTCAGCGCCAGGCTACCAAAGATG 296759 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| |||||||| |||||||| |||||||| || ||||||||||| Sbjct 296758 CTGGGACCATTTCTGGGCTTAATGTGCTTCGTATCATCAATGAGCCGACTGCTGCTGCTA 296699 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 296698 TTGCTTATGGCCTGGACAAA 296679 >seq379 Length=1204239 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || ||||| || || || || || |||||||| || ||||| || || ||||||| Sbjct 796975 ATGCGGTTATAACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAAGATG 797034 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| ||||| || || || || |||||||| || |||||||| || Sbjct 797035 CTGGAGTCATTGCTGGGCTTAACGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 797094 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 797095 TTGCTTATGGCCTAGACAAA 797114 >seq81 Length=8687835 Score = 100 bits (110), Expect = 2e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| ||||||||||||||||| ||||||||||| || || |||| Sbjct 7946667 ATGCTGTTATCACAGTACCTGCATATTTTAATGACTCTCAACGTCAAGCAACCAAGGATG 7946726 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| || ||||| | | || || |||||||| ||||| || || Sbjct 7946727 CTGGAACCATATCTGGTCTAAATGTGTTGAGAATCATTAATGAACCCACTGCAGCAGCTA 7946786 Query 550518 TTGCATATGG 550527 | || ||||| Sbjct 7946787 TCGCTTATGG 7946796 Score = 95.1 bits (104), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || || ||||| || || |||||||| || || || || ||||| |||| Sbjct 7933614 ATGCTGTAATTACAGTGCCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAGGATG 7933555 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||| | || || ||||||||||| ||||| ||||| Sbjct 7933554 CTGGCACAATCTCTGGTCTCAATGTTTTGCGAATCATCAATGAACCAACTGCCGCTGCCA 7933495 Query 550518 TTGCATATGG 550527 |||| || || Sbjct 7933494 TTGCCTACGG 7933485 Score = 91.5 bits (100), Expect = 1e-12 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| || ||||||||||||||||| || || || |||||||| || || ||||| ||||| Sbjct 7932186 AGGCATCCCTCCTGCTCCTCGTGGTGTTCCCCAGATTGAAGTGACATTTGATATTGATGC 7932127 Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590 |||||| ||| ||||||| ||||| Sbjct 7932126 CAATGGCATTATGAATGTCTCTGCT 7932102 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| || ||||||||||| | || |||| ||||||||| Sbjct 7934519 GGTATCGATCTTGGGACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 7934460 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || || ||||| || || || ||||| | |||||||| | | Sbjct 7934459 ATCATTGCCAATGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACGGATAGT 7934400 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || || |||| |||||||| || |||| |||| || || || ||||| || Sbjct 7934399 GAGAGGCTAATTGGAGATGCAGCCAAGAATCAGGTTGCCA-TG--AACCCCACCAACACA 7934343 Query 550175 ATTTTTG 550181 |||||| Sbjct 7934342 GTTTTTG 7934336 Score = 86.0 bits (94), Expect = 5e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| || ||||||||||| | || |||| ||||||||| Sbjct 7945926 GGTATCGATCTTGGGACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 7945985 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || || ||||| || || || || || | ||||| || ||| Sbjct 7945986 ATCATTGCCAATGACCAGGGCAACAGGACAACACCCAGCTACGTGGCCTTCACAGATACT 7946045 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || || |||| |||||||| || |||| Sbjct 7946046 GAGAGGCTAATTGGAGATGCAGCCAAGAATCA 7946077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029275692348160