Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq152 141 8e-29 seq6 100 2e-16 >seq152 Length=5132711 Score = 141 bits (156), Expect = 8e-29 Identities = 137/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| ||||| ||||| || || |||||||||||||| || ||||| ||||||||||| Sbjct 3436872 CATGTTTGTGTATTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTC 3436931 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || |||| ||| || ||||||| || | | ||| |||||||| || Sbjct 3436932 GCCCTCCTCTCTGTCTGTGAACCCGAGATTGTCCAGGAACTGCCGGGACCCGTTGGCCTC 3436991 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30323 ||||||||| ||||| ||||| |||||||| |||| ||||| || |||| |||| Sbjct 3436992 CCAGATCTTCACCCCTTTCTCCGAGAGCTCCTTGGCATTTGTCGATCCCTGTGAC 3437046 Score = 120 bits (132), Expect = 2e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | |||||||||||| || || || Sbjct 3436287 AGTCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGC 3436346 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || || || | |||||| ||||||||||| ||||| || || | | Sbjct 3436347 ACTCCCAGACCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCACAC 3436406 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||| ||||| || | || |||||| || || |||||||| || || |||| Sbjct 3436407 ACGCTGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATTTGGGGCAGGTCT 3436460 >seq6 Length=17310014 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||| ||||||||||| | ||| ||||||| ||| |||||| ||||| || |||||||| Sbjct 13840831 CTCTCTGCTGAGGACGATGTTGATCCTGTTGTTCAAAGGTCTGTTCTTCTCTGGGATGGA 13840772 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| ||||| || ||||| |||||||| |||||| | ||| Sbjct 13840771 AAACCACGTCTTCCTGCCCATGATCACCACATTCTGCCTTCCT 13840729 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||| ||||||||||| | ||| ||||||| ||| |||||| ||||| || |||||||| Sbjct 14041129 CTCTCTGCTGAGGACGATGTTGATCCTGTTGTTCAAAGGTCTGTTCTTCTCTGGGATGGA 14041070 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| ||||| || ||||| |||||||| |||||| | ||| Sbjct 14041069 AAACCACGTCTTCCTGCCCATGATCACCACATTCTGCCTTCCT 14041027 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 111860 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTATGGGAGAAAAGTGTCGCACGCAA 111919 |||||||||||||| ||||| | || |||| | | ||||| || ||||| || ||| Sbjct 13842178 ACTCTGGCAGTAGATGATATTTTCCTGGACTGATTTGAGGGAGGAACGTGTCACAGTCAA 13842119 Query 111920 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCCC 111979 | ||| || | | ||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 13842118 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCTTGGTCCCCGGGCTCTCCATCAGCTCCT 13842059 Query 111980 CGTAG 111984 |||| Sbjct 13842058 GGTAG 13842054 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 111860 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTATGGGAGAAAAGTGTCGCACGCAA 111919 |||||||||||||| ||||| | || |||| | | ||||| || ||||| || ||| Sbjct 14042496 ACTCTGGCAGTAGATGATATTTTCCTGGACTGATTTGAGGGAGGAACGTGTCACAGTCAA 14042437 Query 111920 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCCC 111979 | ||| || | | ||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 14042436 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCTTGGTCCCCGGGCTCTCCATCAGCTCCT 14042377 Query 111980 CGTAG 111984 |||| Sbjct 14042376 GGTAG 14042372 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 112268 CAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGA 112327 |||||||||||||||| | ||| | || |||||||||| ||| |||||||| ||||||| Sbjct 14039547 CAGGATGCCACGGCAGGTTTCCATGGTATCCGATGCCCAGGTCCGGACACACCGCCACGA 14039488 Query 112328 TACCGTTCAGAATGAGGG 112345 ||||||| |||||| ||| Sbjct 14039487 TACCGTTAAGAATGCGGG 14039470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615687669632