Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq136 235 1e-56 seq65 114 2e-20 seq142 93.3 8e-14 seq119 87.8 3e-12 >seq136 Length=1264375 Score = 235 bits (260), Expect = 1e-56 Identities = 842/1298 (65%), Gaps = 44/1298 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGC 221424 || || |||| ||||||||| ||| | ||||| | |||| | ||| || ||||| Sbjct 717221 CCTTCATACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCA-GCTTGCCTCCAGGGC 717163 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||| |||||||||||||||||| ||||||| || |||||||| || Sbjct 717162 GGCGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAA 717103 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 ||| ||||| || ||| | || |||| ||||| || ||||| || || |||| Sbjct 717102 GGGGTGACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACCGATTCCTATTGGCCG 717043 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||| | | ||||||| | ||||| ||| ||||| |||| | ||| || | || Sbjct 717042 GTGGCGCTTGTTGGACCTCTCGGCTTCAACCACTGGATAGTAGTTAATGTCTATGATCTT 716983 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||| |||||| ||| ||||| ||| | | ||| || || || ||| Sbjct 716982 GTTCAGGTTCTTGACGATTACTTTGGTCACATATGACAGTTT-------TTTAAAGTCAA 716930 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 |||| || |||||| | | | | || || || | | |||||| ||||| Sbjct 716929 AGGTCCGC--TC----AGGGGTGACGTACATG--TTGAGAGCGATGGAGGCCAGATTACA 716878 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 ||| |||||||| || | | |||| || | | || ||||| |||||||||||||| || Sbjct 716877 CACCGCCACCTCATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTT 716818 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| ||||| | | || || ||| | ||| ||||| ||||| ||||| | Sbjct 716817 GATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTA 716758 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 || || || || ||| | | | ||| | ||| | | ||| || ||| Sbjct 716757 CGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACCACACCTG-CTGAGCCTTCA 716699 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 || | |||||| ||||| ||| ||||| ||| |||||| ||||||| | Sbjct 716698 CCACTCGCTTGACCCTCCCCTC---CTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCT 716642 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 | || | |||||||| || || ||| | |||||||||||| ||||| | || Sbjct 716641 CCCCCCAGCATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGT 716582 Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083 || | || |||| |||||| | ||| ||||||||||| || | ||| |||||||||| Sbjct 716581 TGCTCTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGG 716522 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 || ||||| ||| || |||| ||| |||| |||| || ||||| | |||| || Sbjct 716521 CCCTTTGCTCATCCTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGT 716462 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203 |||| |||||||| || | ||| | || || |||| ||||||||| ||||| || || Sbjct 716461 GCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCCGCCCTGGTCGACAT 716402 Query 222204 TCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 | | || |||| | | | || | || ||||| || || || ||||| | Sbjct 716401 AACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTG 716342 Query 222264 TGCCCTTAATGTACGCACCGCCG--GCCCTCAGGTTACTGGCAGACATGCCGATACCACC 222321 |||| ||||| || || ||| | || | | ||| | | || ||||| || || Sbjct 716341 TGCCAGCGATGTA-GCTCC-CCGTTGATCTGATGCAGCTGACCGCCACACCGATTCCTCC 716284 Query 222322 GGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTC 222381 || ||| ||||| | ||| || ||| || ||||| ||||| || || ||| Sbjct 716283 AGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTC 716224 Query 222382 CTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAA 222441 ||||| | | ||||| || || |||| ||| | || ||| | ||||| || Sbjct 716223 ATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAA 716164 Query 222442 CAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGAC 222501 || || ||| ||||| || || | | | |||| || | ||| ||||| | | | Sbjct 716163 GAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGACAGAAGGTTGTAGGTCTCAATGGC 716104 Query 222502 TCTGGCGAT----GTTGTCCCCGTGAAT-CTGCATGGCGCATCTCATGTACATGTACTGG 222556 | |||| ||| | ||| || | | | | | ||||||| ||||| ||| Sbjct 716103 TGCATCGATATCAGTTTT----GTGGATGCCGACAGACAC-TCTCATGAGCATGTGCTGC 716049 Query 222557 GGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTG 222613 || | || |||| || || | | | ||||||||| |||||||||||| Sbjct 716048 GGACGCTCAGCCACTTTGCC---GGTGATCTTCAACAGGTACGACCGCTCCAGAGTCTTG 715992 Query 222614 AACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAA 222650 || |||||| ||||| ||| ||| |||||| ||| || Sbjct 715991 AAGCCAAAGAAGTTGTAGGAGAAA-TCTCTGTCGTAAA 715955 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || ||||| ||| |||||| || || || || | Sbjct 717513 CATCTCCTCGTTCCACAGTCCTCTCTCCGTCAGGTCCTTGAGCAGATGAGGATTGACGAT 717454 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| ||||| ||||| | ||| | ||| ||| | | || || Sbjct 717453 CTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTTGTGTAGGCCTCAATAGA 717394 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 717393 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCT 717334 Query 221245 GTT 221247 ||| Sbjct 717333 GTT 717331 >seq65 Length=22759279 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| || || |||||||| ||||| ||| |||||||| || Sbjct 20259613 GGAGAGCGTGTGGTGGCCTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 20259672 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || ||||||||||| || ||| || |||||||| ||| ||| |||||||||||| Sbjct 20259673 GCGATCTTCTGGCTGAAAAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 20259732 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 20259733 ATCAGCAGAGACGAGG 20259748 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| || || |||||||| ||||| ||| |||||||| || Sbjct 20277719 GGAGAGCGTGTGGTGGCCTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 20277660 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || ||||||||||| || ||| || |||||||| ||| ||| |||||||||||| Sbjct 20277659 GCGATCTTCTGGCTGAAAAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 20277600 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 20277599 ATCAGCAGAGACGAGG 20277584 >seq142 Length=12874233 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| | || || ||||| |||||||| || ||||| ||| || || || || Sbjct 6159198 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGAATCTTCTTCTCTGGCTCATTCGCT 6159139 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| ||||||||| ||| || ||||||||||| || ||||| ||||| Sbjct 6159138 GCCATCTATTGGCTCAAGAAGAGAGGCCTGATGCCCGGGCTTACCTACTCCAATGAGCTG 6159079 Query 25993 ATCAGCAGGGACGAGG 26008 || |||||||| |||| Sbjct 6159078 ATAAGCAGGGATGAGG 6159063 >seq119 Length=8001379 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| ||||||||||||||||||| || || || ||||||| || ||||||||| Sbjct 7003066 CATAAAGAGGTCCGGGATCCACATAGCGAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 7003007 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 || |||| ||| ||| ||||| || ||||| | || ||||||||||||||||| Sbjct 7003006 ACCTGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGGCTCCAGATA 7002947 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || || |||| || Sbjct 7002946 CACAGCAAAGGCCCCAGGTCTCT 7002924 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||| ||||||||||| | ||| | |||| ||| ||| || ||| Sbjct 7004637 ACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTACTGGTGTACGCCTCAATG 7004578 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 || ||||||||||||||||| || ||| || ||||||||||| |||| |||||| Sbjct 7004577 GATTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 7004518 Query 221243 CTGTT 221247 ||||| Sbjct 7004517 CTGTT 7004513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840341544960