Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq211 161 6e-34 seq81 122 6e-22 seq289 91.5 1e-12 >seq211 Length=7687989 Score = 161 bits (178), Expect = 6e-34 Identities = 336/496 (68%), Gaps = 6/496 (1%) Strand=Plus/Plus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| ||||| || || |||||||| ||||| || || || || || || ||||| Sbjct 4101000 ATGGCAAAGTGGAGATCATTGCCAACGACCAGGGCAACAGGACCACTCCCAGCTATGTGG 4101059 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 |||||||||| || || || |||||||||||||| || | || | || || | Sbjct 4101060 CTTTTACTGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTCGCCATGAACC 4101119 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 | || || | |||||||| ||| || | || ||| | || ||| | || |||| || Sbjct 4101120 CCACCAACACAGTCTTTGATGCCAAACGACTCATCGGTAGAAAGTTTAACGACACCATTG 4101179 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATA 474618 |||| ||||| ||| | |||||||| |||||||| || | | || || || | Sbjct 4101180 TCCAGTCTGACATGAAACTCTGGCCTTTCAAGGTGATCAACGATAACGGAAAGCCCAAAG 4101239 Query 474619 TATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAAT 474678 | || | | || | |||||| || || || | || || |||| || || || Sbjct 4101240 TTCAGGTGGAGTATA--AAGGTGAGACCAAGGCCTTCTACCCTGAGGAAATCTCGTCCAT 4101297 Query 474679 GGTTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATG 474737 ||| || | |||||||| | | | |||| | ||||| ||||| | || | ||| Sbjct 4101298 GGTCTTGGTTAAAATGAAGGAGATAGCCGAG-GCCTATCTGGGACAGAAGGTGTCAAATG 4101356 Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 |||| || || || ||||| ||||| ||||| ||||| | ||||| || || || || | Sbjct 4101357 CAGTCATCACAGTGCCAGCTTATTTCAATGACTCTCAGAGGCAAGCCACCAAGGACGCAG 4101416 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 || ||| | || || |||||||| | || || || || || |||||||| || | | Sbjct 4101417 GAGTAATCTCTGGACTGAATGTTTTGAGGATCATCAACGAGCCCACAGCAGCAGCCATCG 4101476 Query 474858 CTTATGGTCTTGATAA 474873 | ||||| || || || Sbjct 4101477 CCTATGGCCTGGACAA 4101492 >seq81 Length=8687835 Score = 122 bits (134), Expect = 6e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || |||||||||||||| ||||||||||||||||| || |||| Sbjct 7946667 ATGCTGTTATCACAGTACCTGCATATTTTAATGACTCTCAACGTCAAGCAACCAAGGATG 7946726 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 7946727 CTGGAACCATATCTGGTCTAAATGTGTTGAGAATCATTAATGAACCCACTGCAGCAGCTA 7946786 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | ||||||||| | ||| |||| Sbjct 7946787 TCGCTTATGGTTTGGATGAGAA 7946808 Score = 113 bits (124), Expect = 3e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| |||||| | || || |||| || || | | Sbjct 2939486 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 2939427 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || ||||| || || | || || || || ||||| |||||| Sbjct 2939426 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2939367 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| |||||| ||||| || || || || | |||||||| Sbjct 2939366 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCAAGGGTG 2939307 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| ||||| ||||| ||||| Sbjct 2939306 ATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTG 2939272 Score = 104 bits (114), Expect = 2e-16 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| |||||| | || || || | || || | | Sbjct 2926181 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGG 2926122 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| |||||||| || || | || ||||| || ||||| |||||| Sbjct 2926121 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 2926062 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| |||||| ||||| || ||| || | | || ||||| Sbjct 2926061 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 2926002 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| ||||| || || Sbjct 2926001 ATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 2925967 Score = 104 bits (114), Expect = 2e-16 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| |||||| | || || |||| || || | | Sbjct 2927549 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 2927490 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || ||||| || || | || || || || ||||| |||||| Sbjct 2927489 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2927430 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| |||||| ||||| || || || || | || ||||| Sbjct 2927429 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTG 2927370 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| ||||| ||||| || || Sbjct 2927369 ATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTG 2927335 Score = 100 bits (110), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| |||||| | || || || | || || | | Sbjct 2926409 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGG 2926350 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || ||||| || || | || || || || ||||| |||||| Sbjct 2926349 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2926290 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| |||||| ||||| || ||| | | | |||||||| Sbjct 2926289 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTG 2926230 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| ||||| ||||| || || Sbjct 2926229 ATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTG 2926195 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| |||||| | ||| || |||| || || | | Sbjct 2927321 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGG 2927262 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || ||||| || || | || || || || ||||| |||||| Sbjct 2927261 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2927202 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || || ||||| || || || | | |||||||| Sbjct 2927201 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTG 2927142 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| ||||| || || || || Sbjct 2927141 ATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTG 2927107 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| |||||| | || || |||| || || | Sbjct 2939258 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 2939199 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || ||||| || || | || || || || ||||| |||||| Sbjct 2939198 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2939139 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| |||||| ||||| || ||| | | | |||||||| Sbjct 2939138 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTG 2939079 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| ||||| || || Sbjct 2939078 ATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 2939044 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| |||||| | ||| || |||| || || | Sbjct 2939714 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAGTCAGACAGGGTGCGA 2939655 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || ||||| || || | || || || || ||||| |||||| Sbjct 2939654 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2939595 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || || ||||| || || || | | || ||||| Sbjct 2939594 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTG 2939535 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| ||||| ||||| ||||| Sbjct 2939534 ATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTG 2939500 Score = 95.1 bits (104), Expect = 8e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| |||||||| || ||||| || || ||||| || || || || || ||||| |||| Sbjct 7933614 ATGCTGTAATTACAGTGCCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAGGATG 7933555 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | ||||| |||||||| || || || ||||||||||| || || || Sbjct 7933554 CTGGCACAATCTCTGGTCTCAATGTTTTGCGAATCATCAATGAACCAACTGCCGCTGCCA 7933495 Query 474855 TTGCTTATGG 474864 |||| || || Sbjct 7933494 TTGCCTACGG 7933485 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| ||||||| ||| | || || || ||| ||||| | ||| | || |||| ||| Sbjct 7945920 GCAGTTGGTATCGATCTTGGGACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAA 7945979 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || || |||||||| || || | || || Sbjct 7945980 GTTGAAATCATTGCCAATGACCAGGGCAACAGGACAACACCCAGCTACGTGGCCTTCACA 7946039 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || ||||| || ||||||||||| || || |||| | ||| Sbjct 7946040 GATACTGAGAGGCTAATTGGAGATGCAGCCAAGAATCAGGTTGC 7946083 >seq289 Length=537412 Score = 91.5 bits (100), Expect = 1e-12 Identities = 130/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || |||||||||||||| ||||| | | || |||||||| || | || || Sbjct 334603 GTGGAGATCATTGCCAATGACCAGGGTAACCGCATCACCCCATCATACGTGGCCTTCACC 334544 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 ||| ||| | ||| ||||| ||||||||||| | || |||| | ||||| |||| Sbjct 334543 AGTGAGGGTGAGCGTCTGATTGGTGATGCTGCTAAGAACCA-GCTGACCTCTAACCCTGA 334485 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || || | |||||||| || ||||||||||| || | || | ||| || |||| || Sbjct 334484 GAACACAGTCTTTGATGCCAAGAGATTGATTGGCCGCACTTGGGGTGACTCCTCTGTGCA 334425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268162728376832