Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq170 196 6e-45 >seq170 Length=9359804 Score = 196 bits (216), Expect = 6e-45 Identities = 575/873 (66%), Gaps = 26/873 (3%) Strand=Plus/Minus Query 160098 TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGT-AGGATCCAGTGCACGTCTCCGGA 160156 || || |||||||| || || || || || | | |||| ||| || | ||| |||| Sbjct 986007 TCAAACTTATTTGCAAAGAGTTGTTG----TTGTCTCAGGAGCCACTGGATGTCACCGGC 985952 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| |||| || || | ||| ||| | || ||||||| |||| | |||||||| Sbjct 985951 TCCGTACACACAAACAGCTCGTCTGTAAGCTCCAGTGCAAGGATCGTACGGGGCTCCTTT 985892 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || ||| | | || ||||||||||| | || | || |||||||| || Sbjct 985891 TTTAACATCTCCTGCTAAATAGCTCCACTTCACAACACGAGCGAGGGCTTGCATGTCTGA 985832 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | || || ||| | ||||| | || ||||| |||||| | |||||| || Sbjct 985831 CATATCATACTTGATGTTGGCAGGAACTGATCCAGGAACTGAGGGCATCCTCTGTAGAGT 985772 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 |||||||||||| ||||| || ||||| |||||||| ||| |||| ||| | || | Sbjct 985771 GGCCCACAGGTGCTCGTCTGGACTGTATGTGTCCTTCTCCCACTCCA-GAAGTTTCTGGA 985713 Query 160397 TAAC-CTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGC 160455 | |||||||||| ||||| | || ||| ||| || || |||||||| || | | Sbjct 985712 CCTCTCTGTCCCGCATCACGTGTTTCACAAAGGCTCTTGTGACCACAAAGTAGGCATTCC 985653 Query 160456 CGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGA-CACC 160514 | ||||| || || || || || || | | |||| |||| | ||| | || | Sbjct 985652 CTGAGAACATGGGGCTGTCAATGGGTGGAGGG-CTTT-TCCTCTCATTTGTCCGGTCAAC 985595 Query 160515 ACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC-----GGTGGCA 160569 | | | || | || | | || ||| | | | |||||| | |||||| Sbjct 985594 AGTGTTGGTGACATTG--TGATGATACTGCCAGCGGCCTTTCTTGTACTCACTGGTGGCC 985537 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | | ||||| | ||||| || | || | |||||| || || |||||| Sbjct 985536 T-----CAGTCTCCATGCTGTTTCTTCCATTCAGGGCCTTCAGCGCTTTAACCATCTCTC 985482 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 || || || | || ||||| || || || ||| | || |||| |||| | | Sbjct 985481 TATTGGTTTTAATGGGGAAGTCTGTCCCACAGGTGTTGAGCAGGTACCTCCACTGGATGT 985422 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | || ||||||| ||||||| || | |||||||||||| ||| ||| || || | Sbjct 985421 GCGAGTTCAGCAGGTCTTTCATGCAGTTCAGATCTGCCTGCACTCGGGACCATGAGGCAT 985362 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || ||| | |||| |||||| || ||||| || || | ||| || | ||| || Sbjct 985361 ATACCACGCTTTCTAATTTACTTGCTACAAACACATTGGGAAGACATGAAATGATAGCCT 985302 Query 160810 CCACCGCCAGAAAGAACATCTTATC--CGCCTTTCGGTCCACGTGCACGCAATACAGGTT 160867 ||| ||| | ||| |||| || | ||| ||||||| |||||||| || | ||| Sbjct 985301 TCACAGCCTG-CTGAAATTCTT-TCGAGGATTTTTGGTCCACATGCACGCAGTAAATGTT 985244 Query 160868 CTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCAC 160927 |||||| || || || || | || | | ||| |||||||| ||| | | ||||||||| Sbjct 985243 CTGAGGAGCATAAATAGCTCGTAGAAGTCGCTCAAACATCTCAATCCTCTCATGGATCAC 985184 Query 160928 GATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 || ||||| || || ||||| || ||||||| Sbjct 985183 CATGGAGTAAGCAATGGGAAAATCCTTCTCCTC 985151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577216429347840