Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq211 163 2e-34 seq81 122 7e-22 seq333 98.7 7e-15 >seq211 Length=7687989 Score = 163 bits (180), Expect = 2e-34 Identities = 888/1406 (63%), Gaps = 18/1406 (1%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| ||||| || ||||| || | ||||| || || || | || || || |||| Sbjct 4102396 CACATTCAGAATGCCGTTGGCGTCAATGTCAAAAGTTACCTCGACCTGTGGTACACCTCG 4102337 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 | ||||| ||||| ||| | | ||| | ||||| || || || || || | Sbjct 4102336 GGGGGCAGGAGGGATACCTGTGAGCTCAAACTTGCCCAGGAGGTTGTTGTCCTTGGTCAT 4102277 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || || ||||| | | || || || | | || |||||||| || || | Sbjct 4102276 GGCTCTCTCGCCCTCATACACCTGAATCAGCACACCTGGCTGGTTATCTGAGTATGTGGA 4102217 Query 281611 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || | ||||| | | || |||| || || ||||| | | || | ||||||| Sbjct 4102216 GAAGA-TCTGGGTCTGCTTGGAAGGGATGGTGGTGTTGCGTTTGATTAGCGGCGTCATAA 4102158 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 ||||| || || || | || ||||| || |||| || || | || | | || || Sbjct 4102157 CTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCAGCAGCAGCAGATCTT 4102098 Query 281730 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | | || || || | || | || ||||| || || | || ||||| || || | Sbjct 4102097 GGACGTTCTCCGAGGTGTCGCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTAGGCCA 4102038 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 281848 |||||||||| || || | | | || |||| | | ||||| || |||| || || | Sbjct 4102037 CAGCTTCATCTGGGTTGATGCTCTTGTTCAGTTCTCTGCCATTAAAGAAATCCTGCAATA 4101978 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 || | | || ||||| | | || || ||||| | || |||||||| | || Sbjct 4101977 GCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATTTCATGGATCTTG 4101919 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 || |||||||| || | ||| | |||| ||||| || || || | || || Sbjct 4101918 GACTTATCCAGCTTGGCATCTTGAAGGGCTTTCTCAACTGGCTCCAGTGTTCCCCTGAAG 4101859 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 282026 | ||||| || || || || || || || || || | || || || || | Sbjct 4101858 AGCTCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATGGAGGTGTAGAAGTCGATGC 4101801 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 282086 | ||||||| ||| || | ||||| ||| || || || || || | | || | Sbjct 4101800 CCTCGAACAGAGAGTCGATCTCAATGCTAGCCTGGGTGCTGGAGGACAGGGTCCTCTTTG 4101741 Query 282087 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT--TGCTGATTGATTCAAATCTGT 282144 | | ||||| || |||| ||||| | | ||| | || | ||| | | || | Sbjct 4101740 CTCTCTCACAAGCCGTCCGCAGTCTCCTCACCGCTCTCTTGTT--TTGGCTGATGTCCTT 4101683 Query 282145 TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTC 282204 || | ||||| || || || || || | | || | || || ||||| || || Sbjct 4101682 CTTGTGCTTTCTTTTAAATTCCTCTACGAAGTGGTTGACCATCCGGTTGTCAAAGTCCTC 4101623 Query 282205 ACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGA 282264 || || | | || | ||||| || | | |||| | || | ||||| |||| | Sbjct 4101622 CCCACCAAGGTGTGTGTCTCCTGCAGTGGATTTTACCTCAAAGATGCCATCCTCAATGGT 4101563 Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 || | | || || ||| || ||||| | |||||| || || || || ||| Sbjct 4101562 CAGGATGGACACGTCGAAGGTGCCTCCACCGAGATCAAAGATGAGCACGTTGCGCTCTCC 4101503 Query 282325 GTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 |||| || ||| || || ||||| || | || || || || || || || || || Sbjct 4101502 -TCTT--TTACCTTTGTCCAGGCCATAGGCGATGGCTGCTGCTGTGGGCTCGTTGATGAT 4101446 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 ||||||||||| || |||| ||| |||||| || || |||||||| || || || || Sbjct 4101445 CCTCAAAACATTCAGTCCAGAGATTACTCCTGCGTCCTTGGTGGCTTGCCTCTGAGAGTC 4101386 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT 282501 || ||||| || || || || || || |||| || || | | ||| | ||| || Sbjct 4101385 ATTGAAATAAGCTGGCACTGTGATGACTGCATTTGACACCTTCTGTCCCAGATAGGCCTC 4101326 Query 282502 TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTT 282561 ||| | | ||||||||| || | ||| || || |||| || || | | ||| Sbjct 4101325 GGCTATCTCCTTCATTTTAACCAAGACCATGGACGAGATTTCCTCAGGGTAGAAGGCCTT 4101266 Query 282562 GGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAA 282621 || ||| || ||| || | || | || || | | || || || || || Sbjct 4101265 GGTCTCACCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCGTTGATCACCTTGAA 4101206 Query 282622 TGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCG 282681 ||||| |||||| || || || ||| | ||| ||||| | |||||| || | ||| Sbjct 4101205 AGGCCAGAGTTTCATGTCAGACTGGACAATGGTGTCGTTAAACTTTCTACCGATGAGTCG 4101146 Query 282682 TTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCC 282741 ||| |||||||| | || ||||| || || | || | || | ||||| |||||||| Sbjct 4101145 TTTGGCATCAAAGACTGTGTTGGTGGGGTTCATGGCGACCTGGTTCTTGGCAGCATCTCC 4101086 Query 282742 AATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATC 282801 ||| || ||||| || ||||| | ||||| ||||| || | || || || || Sbjct 4101085 AATGAGCCTCTCTGTGTCAGTAAAAGCCACATAGCTGGGAGTGGTCCTGTTGCCCTGGTC 4101026 Query 282802 ATTCGCAATAATTTCAACTTTACCAT 282827 || ||||| || || ||||| |||| Sbjct 4101025 GTTGGCAATGATCTCCACTTTGCCAT 4101000 >seq81 Length=8687835 Score = 122 bits (134), Expect = 7e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 ||| | |||||| || | ||| || ||||| ||||||||||| |||||||| ||||| || Sbjct 7946803 ATCCAAACCATAAGCGATAGCTGCTGCAGTGGGTTCATTAATGATTCTCAACACATTTAG 7946744 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 ||||| || |||| ||||| || || ||||| | ||| || || |||||||||||||| Sbjct 7946743 ACCAGATATGGTTCCAGCATCCTTGGTTGCTTGACGTTGAGAGTCATTAAAATATGCAGG 7946684 Query 282457 AACAGTAATAACGGCATCTG 282476 || || ||||| |||| || Sbjct 7946683 TACTGTGATAACAGCATTTG 7946664 Score = 104 bits (114), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | || || |||| ||||| |||||||||||||| || |||| ||||||| Sbjct 7933473 TTTTTGTCCAACCCGTAGGCAATGGCAGCGGCAGTTGGTTCATTGATGATTCGCAAAACA 7933532 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||| ||| | || ||||| |||||||| || | || || || || || || Sbjct 7933533 TTGAGACCAGAGATTGTGCCAGCATCCTTAGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 7933592 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 || || || ||||| || |||| |||| Sbjct 7933593 GCTGGCACTGTAATTACAGCAT-TGTT 7933618 Score = 89.7 bits (98), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 86106 TTCACTTCCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAAC 86165 ||| | ||| ||||| || || | |||||||||||| ||||||||||| ||| | | || Sbjct 7946808 TTCTCATCC-AAACCATAAGCGATAGCTGCTGCAGTGGGTTCATTAATGATTCTCAACAC 7946750 Query 86166 ATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATA 86225 || || ||| | || | ||| ||| |||||||| | || | |||||||||||| Sbjct 7946749 ATTTAGACCAGATATGGTTCCAGCATCCTTGGTTGCTTGACGTTGAGAGTCATTAAAATA 7946690 Query 86226 TGCTGGTACAGTAATAACTGCTTT 86249 ||| ||||| || ||||| || || Sbjct 7946689 TGCAGGTACTGTGATAACAGCATT 7946666 >seq333 Length=604933 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| |||||||||||| || ||||| || || | | ||| Sbjct 296677 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTCGGCTCATTGATGATACGAAGCACA 296736 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | || |||||||| || || || | || || || || || || Sbjct 296737 TTAAGCCCAGAAATGGTCCCAGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAC 296796 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| ||||| | || |||| |||||| Sbjct 296797 GCAGGCACAGTCACTACAGCATTTGTTAC 296825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740611547222784