Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq106 125 8e-24 seq170 116 4e-21 >seq106 Length=24502646 Score = 125 bits (138), Expect = 8e-24 Identities = 357/538 (66%), Gaps = 27/538 (5%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || || ||| |||||| ||| || ||||||||||||||| ||| | Sbjct 17417874 GCCAGCTCCTTGGGCGAGGTGAAGTCGTCCACATGGATGAAAGCGTCTCCCTGGATAAAG 17417815 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| |||| | | | ||||| || | || || | || | ||||| Sbjct 17417814 TTCTCGTAGTTCTGCCGGGGCGGGCCGAGAACCACTGGCACTGTCCCCAC----AGAGAG 17417759 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 ||| || ||||| || ||||| |||||| |||| | |||||||||||| || || || Sbjct 17417758 CGGGTTGTACAGTTTCTCAGTAATGTAGTCCTTGTGGATGGAGTTCTCAAAAGCCAGGTA 17417699 Query 177122 GAATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179 ||| |||||| | ||| || |||| | |||| | || | || || || || | Sbjct 17417698 GAACTTACAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCAGAGATGTACTCCCCGAAG 17417641 Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239 | | || || |||| | || |||||||| ||||| |||||| || | | Sbjct 17417640 GCTTGTCCATACGCATGAACCTCGATGTGTTTGTACAGCTCATTGTAGTACTTCACCCGC 17417581 Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACG 177299 ||||| || | |||||| ||||| || | |||||| | | |||| | ||||| || || Sbjct 17417580 ACGTGATCCTGGTTCCAGTTGCTCACAATCCAGCAGATCAGCTTG-TTTTTGCTGG-GCG 17417523 Query 177300 GGATTCGATACTAAT-GCAGT--GTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATA 177356 ||| | || | || | | | || | | || ||||| ||||| | ||| Sbjct 17417522 GGACAAAGTCCTCCTCGCCCTCCGCCGCTACG----ATGGACCCATAAGGCACTTCAATG 17417467 Query 177357 TCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC---TTGTTTG 177413 || | || | | ||| | | || |||||||| ||||| || || || | | | Sbjct 17417466 TCAGCATCCTGACGGTAATTGAGAGTCAGATTGAACAGGTTCTCGATCCCAGGCAGCTGG 17417407 Query 177414 AAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTC 177471 | | | ||| || ||||| || |||||||||||||||||||| || |||| ||||| Sbjct 17417406 GACGAG-TGTGAC--GGCGACTCCAAGTTCATCCATATCCACTTCTGGAAGGATGGTC 17417352 >seq170 Length=9359804 Score = 116 bits (128), Expect = 4e-21 Identities = 489/755 (65%), Gaps = 33/755 (4%) Strand=Plus/Minus Query 162264 CCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACTGAC-G 162322 |||||| || | | || || || |||||||| || | || |||||| | || | | Sbjct 985867 CCACTTCACAACACGAGCGAGGGCTTGCATGTCTGACATATCATACTTG-ATGTTGGCAG 985809 Query 162323 GCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGAC 162382 | || | ||||||||| |||| ||||||||||| ||||||||||| |||||||||| Sbjct 985808 GAACTGATCCAGGAACTGAGGGCATCCTCTGTAGAGTGGCCCACAGGTGCTCGTCTGGAC 985749 Query 162383 TATACGTCTCCTTCGACCACTCCATGAACTCCCT-GACCGTTTTATCGTATAGAATGTAA 162441 | || || |||||| |||||||| ||| | || |||| | | || | | || Sbjct 985748 TGTATGTGTCCTTCTCCCACTCCA-GAAGTTTCTGGACCTCTCTGTCCCGCATCACGTGT 985690 Query 162442 GAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATA 162501 || ||| || || || | |||||| || | || || |||| ||| || || Sbjct 985689 TTCACAAAGGCTCTTGTGACCACAAAGTAGGCATTCCCTGAGAACATGGGGCTGTCAATG 985630 Query 162502 GGAGG-GGGCTCTTTGTC----TTGACCCGTGTTGACTACCATTCCCTCTACGACCACGT 162556 || || ||||| || || ||| || || | || | | ||| || Sbjct 985629 GGTGGAGGGCTTTTCCTCTCATTTGTCCGGT-----CAACAGT---GTTGGTGACATTGT 985578 Query 162557 GTCTCTTCCTCCACCTGGCCATCTTACTGGTA--GACGGGTG--TTCGGTCTCTAGACTG 162612 | | | ||| | ||| ||| || ||| || |||| || ||||| | ||| Sbjct 985577 GATGATACTGCCAGC-GGC---CTTTCTTGTACTCACTGGTGGCCTCAGTCTCCATGCTG 985522 Query 162613 TTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAG 162672 || | || || |||||||||| ||||||||| |||||| |||| ||| ||| Sbjct 985521 TTTCTTCCATTCAGGGCCTTCAGCGCTTTAACCATCTCTCTATTGGTTTTAATGGGGAAG 985462 Query 162673 TCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACG-CTGAGTCCGTACAGATCCTG 162731 || || || ||| || | | || |||||| | | |||| | ||| || | Sbjct 985461 TCTGTCCCACAGGTGTTGAGCAGGTACCTCCACTGGATGTGCGAGTTC-AGCAGGTCTTT 985403 Query 162732 TAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCT 162791 | ||||||||||| ||||| || || ||| || || || || ||||| || || | Sbjct 985402 CATGCAGTTCAGATCTGCCTGCACTCGGGACCATGAGGCATATACCACGCTTTCTAATTT 985343 Query 162792 AGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG-TGAGA--A 162848 | | || ||||| |||||| | ||| |||| || || |||| ||| | ||| | Sbjct 985342 ACTTGCTACAAACACATTGGGAAGACATGAAATGATAGCCTTCACAGCCTGCTGAAATTC 985283 Query 162849 CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGC 162908 ||| | | ||| || || || |||||||| | |||||||| || || || || Sbjct 985282 TTTCGAG---GATTTTTGGTCCACATGCACGCAGTAAATGTTCTGAGGAGCATAAATAGC 985226 Query 162909 CCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGG 162968 | || | || ||| |||||||| ||| | | || | ||| || || || || ||||| Sbjct 985225 TCGTAGAAGTCGCTCAAACATCTCAATCCTCTCATGGATCACCATGGAGTAAGCAATGGG 985166 Query 162969 GAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAA 163003 || || |||||| |||||||| | |||||| Sbjct 985165 AAAATCCTTCTCCTCTTTACTGAGAGGCACTGTAA 985131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578429223526400