Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq136 197 1e-45 seq166 96.9 3e-15 seq81 96.9 3e-15 >seq136 Length=1264375 Score = 197 bits (218), Expect = 1e-45 Identities = 983/1540 (64%), Gaps = 44/1540 (3%) Strand=Plus/Minus Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950 ||||||| | |||||||| || | || || | | | || | ||||| ||| | | Sbjct 717463 GATTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTTGTGTAGG 717404 Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 ||||| |||||| || ||||| | || ||||| |||| || || ||||| |||| Sbjct 717403 CCTCAATAGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCA 717344 Query 147011 CCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCC 147069 || || || | || |||| | ||| || ||||||| || || |||||| Sbjct 717343 GCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCG 717285 Query 147070 CACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 |||| | ||||||| | |||||||||||||||||| || ||| | ||| Sbjct 717284 CACAGGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGGTGCCCTTGCTGACAGGA 717225 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCGAG 147188 ||| | |||| |||| ||| || | ||| ||| || ||||||||||| || Sbjct 717224 GAGCCTTCATACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCGCAGCTTGCCTCCAG 717166 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | ||||| ||||| || ||| || |||| || | || || ||| || Sbjct 717165 GGCGGCGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTC 717106 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | || ||||| || | |||||||| ||||||||||| | ||||| || || || Sbjct 717105 AAAGGGGTGACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACCGATTCCTATTGG 717046 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAAT 147368 || || | |||| | || || | | ||||||| ||| || || || Sbjct 717045 CCGGTGGCGCTTGTTGGACCTCTCGGCTTCAACCACTGGATAGTAGTTAATGTCTATGAT 716986 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||| ||||| || | ||||| || | | ||||| | || ||| | || Sbjct 716985 CTTGTTCAGGTTCTTGACGATTACTTTGGTCACATATGACAGTTTTTTAAAGTCAAAGGT 716926 Query 147429 CCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCG 147487 || || | |||||| || ||| | ||||| || |||||||| || || ||| Sbjct 716925 CCGCTCAGGGGTGACGTAC--AT--GTTGAGAGCGATGGAGGCCAGATTACACACCGCCA 716870 Query 147488 TCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTC 147547 ||| ||| | | |||| | || ||||| | ||| |||||||||||||| ||| | Sbjct 716869 CCTCATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGC 716810 Query 147548 CCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 147607 ||| ||| ||||| ||||| |||| ||||| ||||||||| | |||||||||||| | Sbjct 716809 CCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTAC 716750 Query 147608 CGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGC--TC-GCACCC 147661 | || || || | ||||| || | ||| || | ||| || || ||| | Sbjct 716749 CCGTTTCTGTCTGGGATTCAATAATGGCATACC---ACACCTGCTGAGCCTTCACCACTC 716693 Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 ||| || | ||||| || || || ||| | | |||||||||| || || Sbjct 716692 GCT--TGA-CCCTCCCCTCCTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCTCCCCCC 716636 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 |||| ||| | || ||||| |||| | |||||||||||| ||||| | || | Sbjct 716635 AGCATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCT 716576 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTT 147839 || | ||| |||| || || | |||||| || || | |||||| | || |||| Sbjct 716575 CCACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTT 716516 Query 147840 GCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCA 147899 || || || ||| |||| |||| | || | | | | | ||| |||||| Sbjct 716515 GC--TCATCCTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCA 716458 Query 147900 GGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCGACATGGCG 147956 || || | ||| | ||| | || || | | || |||||||||||||||| || Sbjct 716457 TGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCCGCCCTGGTCGACATAACG 716398 Query 147957 CACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGA 148016 | || ||||||| | || | || |||||| |||| || | | ||||||| ||| Sbjct 716397 CGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGCC 716338 Query 148017 ATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCA-----ATGCCGCC- 148070 | ||| | ||| || || | | | | |||| | | ||||| || || || Sbjct 716337 AGCGATGTAGCT-CCCCG---TTG-ATCTGATGCAGCTGACCGCCACACCGATTCCTCCA 716283 Query 148071 GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTC 148130 |||| | || || ||| || |||| || || || ||||| || |||||||| Sbjct 716282 GCCG-ATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTC 716224 Query 148131 GTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAA 148190 | || | | |||||| || || | ||| || || | ||||| || ||| Sbjct 716223 ATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAA 716164 Query 148191 AAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGACTCATCATGCGATACGTCTCAATA 148248 || || ||| ||||| || ||| | | | ||| || | | || |||||||| Sbjct 716163 GAGTGTAGGAGAAGCGTGGGTGAACCACCTCTCTGA--CAGAAGGTTGTAGGTCTCAATG 716106 Query 148249 GCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGT 148308 || | ||||| || ||| ||||| | | || | ||||||||||||||| || Sbjct 716105 GCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGAGCATGTGCTGCGGA 716046 Query 148309 CGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCA 148368 || || || |||| | ||||||| | || || || || || ||| | ||| Sbjct 716045 CGCTCAGCCACTTTGCCGGTGATCTTCAACAGGTACGACCGCTCCAGAGTCTTGAAGCCA 715986 Query 148369 AAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||| | ||||| |||||| |||||| |||||||| Sbjct 715985 AAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGCCG 715946 >seq166 Length=972737 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || |||||| ||||| || |||| Sbjct 969418 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCG 969359 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| ||||||||||| || ||||| || | Sbjct 969358 AAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGACA 969299 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||| || || | || | || || ||||| || || || Sbjct 969298 TTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTC 969239 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 969238 ACGAAGATCTGCATGCCT 969221 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || ||||| ||||| || || | | Sbjct 969646 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCA 969587 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || |||||||| ||||| || || ||| | Sbjct 969586 AAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGACA 969527 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | || || || || | || | || || ||||| || || || Sbjct 969526 TTCTCAATGGTGTCGCTGGGTTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTC 969467 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 969466 ACGAAGATCTGCATGCCT 969449 >seq81 Length=8687835 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| || ||||||||||| || ||| || | Sbjct 2925950 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA 2925891 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| |||||||| || |||||||| ||| Sbjct 2925890 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTA 2925831 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | || | |||||| | ||||| || || | || | Sbjct 2925830 TCCTGGATTTTTGCCTTGACATTCTCAATGGTATCGCTGGGCTCAACCTCCAAGGTGATG 2925771 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || || || | || ||||||||| Sbjct 2925770 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 2925735 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| || ||| || | Sbjct 2927090 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA 2927031 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| |||||||| || |||||||| || Sbjct 2927030 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 2926971 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | || | Sbjct 2926970 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATG 2926911 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| || || || | ||| || ||||| Sbjct 2926910 GTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2926876 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| || ||| || | Sbjct 2926634 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA 2926575 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| |||||||| || |||||||| || Sbjct 2926574 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 2926515 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | || || || || | || | Sbjct 2926514 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCAAGGGTGATG 2926455 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| || || || | || |||||||| Sbjct 2926454 GTCTTACCAGTGAGGGTCTTGACAAATATCTGCAT 2926420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608912266240