Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq136 529 2e-145 seq119 109 8e-19 >seq136 Length=1264375 Score = 529 bits (586), Expect = 2e-145 Identities = 1285/1939 (66%), Gaps = 13/1939 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||||| | ||||||||| | | | || ||||| ||||| Sbjct 717518 TTCTTCATCTCCTCGTTCCACAGTCCTCTCTCCGTCAGGTCCTTGAGCAGATGAGGATTG 717459 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || || || | || || || ||||| || || || || || | || Sbjct 717458 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTTGTGTAGGCCTCA 717399 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | ||| || || || ||||| || || || || || || || ||||| || |||| || Sbjct 717398 ATAGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 717339 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || || | ||| || || || || | ||||| || || || Sbjct 717338 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCGCACAGG 717279 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 |||| || | ||| | ||||| || || | || || || || || || Sbjct 717278 TCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGGTGCCCTTGCTGACAGGAGAGCCT 717219 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | ||| || || || || || || | || || || || |||||||| | || || Sbjct 717218 TCATACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTTGCCTCCAGGGCGGCG 717159 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || || || | | ||||| || || || | || || || || Sbjct 717158 TAGTAGATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGG 717099 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 | | | | || || || ||||| ||||| |||||||| || || || || || | || Sbjct 717098 TGACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACCGATTCCTATTGGCCGGTGG 717039 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || || || ||||| | ||||| || ||||| ||||| || || || Sbjct 717038 CGCTTGTTGGACCTCTCGGCTTCAACCACTGGATAGTAGTTAATGTCTATGATCTTGTTC 716979 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCA 69249 || || ||| | |||||| ||| | ||||| ||| ||||| || || Sbjct 716978 AGGTTCTTGACGATTACTTTGGTCACATATGACAGTTTTTTAAAGTCAAAGGTCCGCTCA 716919 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || | || || |||||||| || || ||||||| Sbjct 716918 GGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACCGCCACCTCATCGTGG 716859 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| | || ||||| || || || || |||||||| || |||||||| ||| Sbjct 716858 CTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGC 716799 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| |||| |||||||| ||||| || || |||| ||||| ||||| || Sbjct 716798 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTTTCTGTC 716739 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 || ||||| ||||| | | ||| || | ||| || | || |||| | | | Sbjct 716738 TGGGATTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACTCGCTTGACCCTCCCC 716679 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || || ||||||| || || ||| | || || || || ||||| || |||| || Sbjct 716678 TCCTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCTCCCCCCAGCATTCGTCCAGCCCG 716619 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 || || || || |||||||||| ||||| | | | || |||| ||||| || Sbjct 716618 GGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAAC 716559 Query 69610 AGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 | || || ||||| || || ||| |||||||||| || | || || || || || Sbjct 716558 AAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTG 716499 Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 || || || || || || || || | | ||| | |||||||| || || || || || Sbjct 716498 TTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCG 716439 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789 | | ||||||||| || || || ||||| || | || | || ||||| || || ||| Sbjct 716438 AAGGCTCCCGGTCTCTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACT 716379 Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 |||||||| || | | ||||||||| || || ||||| |||| || || || || || Sbjct 716378 CTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTT 716319 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909 | | || || | | | ||| |||||||| ||| ||| ||||| || |||||| Sbjct 716318 GATCTGATGCAGCTGACCGCCACACCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAA 716259 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969 | |||| |||||||| || || || ||||| ||||| ||||| ||| || || ||| Sbjct 716258 TGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAG 716199 Query 69970 CTAGACATTTGATGA-TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028 ||||||| || | ||| | ||||| || || || | ||||||||| ||||| ||||| Sbjct 716198 CTAGACAGCTGTGGCCTGT-TGGTTCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAA 716140 Query 70029 CCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAAT 70088 ||| | || || || || ||||| || ||||| |||| || ||||| | || || Sbjct 716139 CCACCTCTCTGACAGAAGGTTGTAGGTCTCAATGGCTGCATCGATATCAGTTTTGTGGAT 716080 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 || | | || | ||| | ||| ||||| || || || || ||| | || || Sbjct 716079 GCCGACAGACACTCTCATGAGCATGTGCTGCGGACGCTCAGCCACTTTGCCGGTGATCTT 716020 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 ||||||||| || |||||||| || || ||||| ||||||| || || ||||| || Sbjct 716019 CAACAGGTACGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTC 715960 Query 70209 GTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCA---TAACAGT 70265 |||||| || | || || || || || | | ||| || || | | | | Sbjct 715959 GTAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACAATGTCGAGGGTCTCCTT 715900 Query 70266 AGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTC 70325 ||||| || || || |||| ||| ||| || | |||||| | | || || Sbjct 715899 ---GGAGATCATGGGGGAGTGTTTTTTATTCAGAGGGTTGATGTAGTTGTACAGGTCCTC 715843 Query 70326 CATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGC 70385 ||| || ||||| || | ||| || || || ||||| | || || | || || | || Sbjct 715842 CATCACCTCACTGAACACTTTCTTCGTCTCTTTGTGCAGGTTGGAAACAGCGATCCGTGC 715783 Query 70386 TGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAA 70445 || || || || ||||| || |||| || || ||| || || || || || || | Sbjct 715782 AGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCTGCCAG 715723 Query 70446 CGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 70505 ||| || | || | || || |||||| | || | || ||||| || ||||||| || Sbjct 715722 CGTGTCGAGCTCCACGGTGGTGACTCCGCTGTACAAACCCTGAATCACCTTCATGGTGAT 715663 Query 70506 TTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACGAGATG 70564 || | || || | || || | |||||| ||||| || || |||| || ||||| | Sbjct 715662 TTGGGCCGGGTCCACAAAGTCAGAGTTCAGTCCATAGCA-AAGCTTCTGGATGCGAGAGG 715604 Query 70565 TAATTTTATCAAACATAAC 70583 | |||||||| ||||| || Sbjct 715603 TGATTTTATCGAACATGAC 715585 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||| || || |||||| || |||| || || || || || | Sbjct 718159 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCGATGTGGATGT 718100 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || || || |||||| | || || | || || ||||| || | || ||| Sbjct 718099 TCAGGGACTGGCTCTGGTCGATGTAGGCGCCACGGTCGGCGGCCATCTTCAGTATGGTCT 718040 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||| | || ||| | | ||| || | ||||||||||| Sbjct 718039 TCTGGGAGATTTCCCACACCGTTTTATACAGCTGCTTCAGATCATCTGGAA 717989 >seq119 Length=8001379 Score = 109 bits (120), Expect = 8e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||||||||| ||||||||||| ||||||| || |||| ||| ||||| || ||||| | Sbjct 7003604 TATCTCTGTGCATAGATTACTGGATTTGATGGTGCCCAAATTCTGCTGGTTGCTCTTCCT 7003545 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || | || ||||||||||| |||| || ||||| || Sbjct 7003544 ATTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTCTGTCTGTGACTCGATGAT 7003485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905502837760