Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq133 118 8e-22 seq220 82.4 6e-11 >seq133 Length=1235928 Score = 118 bits (130), Expect = 8e-22 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||||||||||||||| | || ||| ||||||||||| |||||| || ||||||| Sbjct 83016 CCAGACAACCTCCAGCTCTGAGTTCAGTCTGTCCAGCTTCACAAAGTCTTCTTTGTTGAT 82957 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||||| ||| | |||||||||||||||| ||||||||||||| ||||| | | Sbjct 82956 GATCTGACC-TCCAGATTTCAGCCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGCTGG 82898 Query 77430 TCACACC 77436 ||||||| Sbjct 82897 TCACACC 82891 Score = 105 bits (116), Expect = 5e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| ||||||||||||||||| ||||| |||||||||||| || ||| | || Sbjct 81124 CTCCTCTGAAAAACGCCCAGGCATCTTTCTCTGATGCAAACTTCTTGAAAGAGGCAGATG 81065 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| || || || |||||||||||||||| Sbjct 81064 GGAATTTCTCCACCTGACTCTTACATTCATCCC 81032 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| ||||| |||||| ||||||| ||||| | |||||||||||||| || ||| | Sbjct 82602 CACCGTTGATCGTGAACTTGCTGTCGGTGTAAAGAACCAGCTTCTTGATGTTCAACTCTT 82543 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCA 77530 ||||||| ||| |||||| | || |||||| || || Sbjct 82542 TGGCTTGTTCCAGCGCTTTGCAGGCTGCCTGGTTTACA 82505 >seq220 Length=19050403 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 87696 CATCCGTATCTTGATATTAGCTGTAGCAACATTTGTGCCATAGTTAAAATCATCTTCTAC 87755 ||| ||||| | |||| | |||||||||||||||||||||||||||||||| ||||| | Sbjct 14927421 CATTCGTATGTGGATACTGGCTGTAGCAACATTTGTGCCATAGTTAAAATCGTCTTCAAT 14927362 Query 87756 TAAAGATTGCGAGTGCTTTTCACTTGTCATTGT 87788 |||| ||| || |||||| | |||| || Sbjct 14927361 AGAAGACCGCGGGTATTTTTCAGTACTCATCGT 14927329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454139905920